PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0849.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 1091aa    MW: 120271 Da    PI: 6.5056
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0849.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22139240199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Kaladp0024s0849.2.p 139 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLTGDSVLFI 226
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++ +r+
  Kaladp0024s0849.2.p 227 --RDEKQQLLLGTRRA 240
                          ..55788889999886 PP
2Auxin_resp116.62.1e-38265348183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+aa+++s+F+v+YnPr+s+seFv++++k+ ka++  ++s+GmRf+m fete+s +rr++Gt++g+sd+dpv+W+nS+Wr+L+
  Kaladp0024s0849.2.p 265 AANAAANNSIFTVFYNPRTSPSEFVIPLAKYYKAVNsYQISLGMRFRMTFETEESGTRRYMGTITGISDVDPVNWKNSQWRNLQ 348
                          799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42130266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-39130254IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-20138230No hitNo description
PfamPF023626.9E-21139240IPR003340B3 DNA binding domain
SMARTSM010193.7E-22139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787139241IPR003340B3 DNA binding domain
PfamPF065072.9E-34265348IPR010525Auxin response factor
PfamPF023091.5E-79781063IPR033389AUX/IAA domain
PROSITE profilePS5174528.1759781063IPR000270PB1 domain
SuperFamilySSF542773.01E-89901057No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MSATMAPASA VADAETPPAE AVVRCQDANK TINPELWQAC AGPLVNLPMA GTHVVYFPQG  60
HSEQVAVSMK KDVDAQYPNY SNLPPKLICL LHSVTLLANP DTDEVYAQMV LQPVSSIDQE  120
ALIGSDHSLK SHKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIV  180
AKDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLTG DSVLFIRDEK QQLLLGTRRA  240
NRLPPNVSSS VISSDSMHIG ILAAAANAAA NNSIFTVFYN PRTSPSEFVI PLAKYYKAVN  300
SYQISLGMRF RMTFETEESG TRRYMGTITG ISDVDPVNWK NSQWRNLQVG WDEENTGEKC  360
HRVSIWDIEP VTAPYFICPP PFIRFKRPRQ IGMPDEESSD MENLFKRVMP WLHDNAFLKE  420
SRPIPGINFT QWMNMQQNHL LTHSLQSAYM PSIPGCVLPS LAEADPSQHV GLSASHYPPQ  480
SNPQLGIQWP QQQLHQLPKP SPLNPCSTSH QHLPDLTQQS QNSVSQLPAS SHYMLPQTQV  540
KITDILQKQL ASQNAQAQGS IPQISNQQQL LSTSHNLGQL PEIVNQPVTN NLIQLPMLQR  600
GHQQEQQYLH SQQSITQHVG QIASFQGQQR PTADVANNIY IPASIGSVQA VEMPQVMTSS  660
TYPCTMDPTQ QQCGNNTGLS TGCISSSPQQ LRSVHQPLAV NISELPFPTG CHTSNVNQVS  720
VDGTTIWTGA GQLLCANGVP SCSTSTLNEK FPNAIKSVKG MIQKSYIQGP EDMTPPAFIL  780
PVTGAIESAS SSNSFVRCSE NKSAVLTELC NGKKQNAGVA NNFMIVNSVQ PQKNYLDTSY  840
SSTSVSQFEN NASLQQNVNP ASFSFQPMMS QTAVGFVDHR NNISFEMSSG QNITSLNQDP  900
LLSQDIVSLG KNKSASEDML HDFEYAKDPQ QELSSSIVSQ SFGVPDMTFN SIESTLSDNS  960
FIAKPPFAPP PQPYQRLRTY TKVYKRGAVG RSIDITAYSG YDDLKQDLAR RFGIEGQLED  1020
RHKVRWKLVY VDHENDVLLV GDDPWEEFVS CVRSIKILSP QEVQQMSLDG DVSNSVLLKQ  1080
ACSSSNGGIG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1553136950388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein