PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0024s0730.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 160aa MW: 17128.1 Da PI: 9.79 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.4 | 5.3e-34 | 10 | 154 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 g kdrh k+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWL+++a +i el+++ +++s+s++ Kaladp0024s0730.1.p 10 SGDKDRHNKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGNDQPSKAVEWLIKAAADSIAELPSLtgpfpetarqlcdaklGFESSSAAAV 99 578*************************************************************99999999999999884444433423 PP TCP 76 esssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrek 129 +++ +++++++ + + s+ s+ s++s+ s l+l + + r ++r ar r+ e+ Kaladp0024s0730.1.p 100 AAEADASHTQQKMNVCMSKSASSTSETSKGSGLSLTRtDARVNQRVGARARSGES 154 3333333334445666666666777777777777777666655555555554443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-35 | 11 | 157 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.093 | 12 | 70 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MPIFRVSRAS GDKDRHNKVL TSKGLRDRRV RLSVSTAIQF YDLQDRLGND QPSKAVEWLI 60 KAAADSIAEL PSLTGPFPET ARQLCDAKLG FESSSAAAVA AEADASHTQQ KMNVCMSKSA 120 SSTSETSKGS GLSLTRTDAR VNQRVGARAR SGESEREGE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-24 | 17 | 71 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-24 | 17 | 71 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096599.1 | 6e-58 | transcription factor TCP2-like | ||||
Refseq | XP_011096600.1 | 6e-58 | transcription factor TCP2-like | ||||
Refseq | XP_020554008.1 | 6e-58 | transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 3e-41 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | F6HLT7 | 2e-54 | F6HLT7_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0003g03910.t01 | 3e-55 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 5e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0024s0730.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|