PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0655.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 426aa MW: 47281.4 Da PI: 7.6451 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.7 | 8.4e-32 | 117 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Kaladp0024s0655.1.p 117 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 206 89****************************66677899*************************************************665 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ ++ +l++ ++r+ Kaladp0024s0655.1.p 207 GEaDKHRLFIDWRRR 221 888999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-41 | 111 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-29 | 114 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.48E-25 | 115 | 204 | No hit | No description |
Pfam | PF02362 | 5.1E-29 | 117 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-22 | 117 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.325 | 117 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MEYGSNSQEF DHSIQQDFRA SGNEIYPSGS SRDWFAAASN RFAAADDRSD LMEASPPAAA 60 NENDYDHEHV RRVSDSHHHH HHHHHQMQQQ QQHYAQQQTL GIGIGGQICN IEREHMFDKV 120 VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED LTGKPWRFRY SYWNSSQSYV 180 MTKGWSRFVK EKKLDAGDIV SFQRGVGEAD KHRLFIDWRR RPITTLPFDG SPFLHSHFYR 240 SAGGNIPSWS PLLLRPPPSR VHPSINFQIP NQHHPSSNYY STGYSGGGGN YMGQVVSNNA 300 SVVYFTSPEG IGMVRGRAGG GAGETIPVVF ESVPVVQGKK VAAAAKRLRL FGVNMECPVS 360 SDTSTSTENE FEILSSSSGI PVNGTTLSQQ YPSSSTLFLP SSTRMYNGTP VSNKGKTSMS 420 LDLDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-67 | 112 | 222 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-67 | 112 | 222 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439872.1 | 1e-107 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_012439873.1 | 1e-107 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 2e-77 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0D2Q216 | 1e-106 | A0A0D2Q216_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G261100.1 | 1e-107 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0655.1.p |