PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0221.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 25147.7 Da PI: 9.5439 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 9.5e-19 | 119 | 208 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ + +l lp +f+++h k e+ ++tlede+g++ ++ ++ + l++GW++F+ +++L +gD +vF+l++ ++f Kaladp0024s0221.1.p 119 FVKPMSRSHVTGRFWLGLPQRFCKAHLPK--EDEMITLEDEDGNESPSNY--LANRTG--LSGGWRGFALDHELVDGDALVFQLIRPTKF 202 89************************533..4569***************..555444..*************************97777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kaladp0024s0221.1.p 203 --MVYIVR 208 ..999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-25 | 113 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 115 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.69E-28 | 117 | 208 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 119 | 210 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-25 | 119 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-17 | 119 | 208 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVESATSNYE KLRRQRLKEN KKRMEELNLS KSLYAATPKP SPAKHRKPKS ARKEVDLFAV 60 RRSRRTAGKP RPDYKEGMCL MLSRGDLLNC VYASHESRLS AVKRAEQLES ELGFEYPCFV 120 KPMSRSHVTG RFWLGLPQRF CKAHLPKEDE MITLEDEDGN ESPSNYLANR TGLSGGWRGF 180 ALDHELVDGD ALVFQLIRPT KFMVYIVRVN EHENGDESN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 22 | RRQRLKENKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028070755.1 | 3e-88 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 8e-71 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC1 | 5e-86 | F6HQC1_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00620.t01 | 8e-87 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-73 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0221.1.p |
Publications ? help Back to Top | |||
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