PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0184.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 39082 Da PI: 6.2752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.6e-14 | 158 | 204 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+Er+RR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Kaladp0024s0184.1.p 158 KSHSEAERKRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 204 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.774 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 158 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-14 | 158 | 207 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-14 | 159 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-15 | 159 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.2E-5 | 242 | 304 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MKEEDHYSQS IQNFQEQILL QQQIMQSQNM NNSNMMMTSS DHHVYGGGGL IYPSEVSPIL 60 PWSLPQVHPF LPQPPYGPAN SFSVFNRSRA GHPQHQFHNS LQFAYDGIGP SSDHHNLRLL 120 SEALGPVMNQ PGVSPFGGEL GKMTAQEIMD AKALAASKSH SEAERKRRER INNHLAKLRS 180 LLPSTTKTDK ASLLAEVIQH VKELKRQTAT ISETAMVPTE ADELTVDAAD DEYYGKLVIK 240 ASICCEDRPD LLPDLIKTLK ALKLKTLKAE ITTLGGRVKN VLFITGEDHD HCEEGEEMQM 300 QYSVSSIQEV LRGVMEKGGG GSEDGSAGSV KRQRTTNSND ASNMNISMLE NRSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297146.1 | 1e-129 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_011462943.1 | 1e-129 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 2e-98 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | W9R402 | 1e-120 | W9R402_9ROSA; Uncharacterized protein | ||||
STRING | XP_004297146.1 | 1e-129 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0184.1.p |
Publications ? help Back to Top | |||
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