PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 324aa    MW: 35304.4 Da    PI: 6.5808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEde+l+ +++q+G+g +W + +++ g++R++k+c++rw++yl
  Kaladp0024s0003.1.p 14 RGPWSPEEDEILKSYIQQHGTGgNWIALPSKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding38.72.4e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+eEd  +  +  + G++ W+ Ia+++  gRt++++k++w++
  Kaladp0024s0003.1.p  69 GAFTEEEDRVIFSLYYEIGSR-WSIIAAKLH-GRTDNDVKNHWNT 111
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139962IPR017930Myb domain
SuperFamilySSF466895.75E-2811109IPR009057Homeodomain-like
SMARTSM007178.6E-131364IPR001005SANT/Myb domain
PfamPF002498.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-251569IPR009057Homeodomain-like
CDDcd001671.02E-91662No hitNo description
PROSITE profilePS5129421.82763117IPR017930Myb domain
SMARTSM007173.7E-1167115IPR001005SANT/Myb domain
PfamPF002496.4E-1169111IPR001005SANT/Myb domain
CDDcd001673.14E-870113No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2270115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEILKSYIQ QHGTGGNWIA LPSKAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTEEEDRVIF SLYYEIGSRW SIIAAKLHGR TDNDVKNHWN TKLKKLIMLK  120
DQADAYPEFL RSTKPAHSSF SGSADHESYS FVRFPSLKTE THQESLPPMP NLPPGVSGYD  180
GSSLAFMHHD PAGFTVPAPL LSMPTYHASK ATAIPPNSSE SELSGGSSST MNAGTVSWPD  240
GGGSGVEDGG LLNDILIYGG EGMNNGCRHM FQSTFESGNQ KCSSSEDLGN GAAPTFSAML  300
SDYIYELKPQ GVFQNQNGLI DQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
1gv2_A3e-25141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25141174105C-Myb DNA-Binding Domain
1msf_C3e-25141174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506838.21e-72transcription factor MYB87-like
RefseqXP_020700672.17e-73transcription factor MYB36
TrEMBLA0A1S3ULA43e-71A0A1S3ULA4_VIGRR; transcription factor MYB87-like
TrEMBLA0A2I0WSE92e-71A0A2I0WSE9_9ASPA; Transcription factor RAX2
STRINGXP_007160258.18e-70(Phaseolus vulgaris)
STRINGSb03g003120.15e-70(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36