PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0245.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 285aa    MW: 32457.4 Da    PI: 4.8577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.7e-1992184190
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+l +sdv+ ++r+++pkk ae++   ++++ ++ ++++d +g r+W++k++y  +++s++yvl+ ++ eFv+ + Lk+gD +++++d
  Kaladp0022s0245.1.p  92 FQKQLQNSDVNPLRRMIIPKKAAETFlpVLESKDGTLIRMRDFDGvRTWSFKYRYwpNNNSRMYVLE-NTGEFVNLHSLKQGDYILLYRD 180
                          99*********************999**555567889*****9999*********89999999***9.********************54 PP

                          SSSEE CS
                   B3  86 grsef 90 
                          + ++f
  Kaladp0022s0245.1.p 181 E-NQF 184
                          3.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2586186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-2190186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-2290186No hitNo description
PROSITE profilePS5086310.02492193IPR003340B3 DNA binding domain
SMARTSM010195.0E-1792193IPR003340B3 DNA binding domain
PfamPF023624.9E-1692184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGLEKEVAE GGESNNNNDR VEEYVELTRD LMASGFRRKR VIRQARKRSA GFASLSFPSP  60
PPPVPLDLLP PPPAPDLPTH EKMRHSNLTF LFQKQLQNSD VNPLRRMIIP KKAAETFLPV  120
LESKDGTLIR MRDFDGVRTW SFKYRYWPNN NSRMYVLENT GEFVNLHSLK QGDYILLYRD  180
ENQFYVIEAK RAADLEASAD MTGNAVNELS LSDFEVIASS DMYVKFPLAD DSNNSYIYET  240
SFTTDTPFGF FDHSASNSHS NLKIDPLESF GSVESWLFDD LQFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-45881961110B3 domain-containing transcription factor FUS3
6j9b_D1e-45881961110B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1797802e-50EF179780.1 Kalanchoe daigremontiana FUS3-like protein (FUS3) gene, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-51B3 family protein