PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0022s0168.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 298aa MW: 32954.4 Da PI: 7.017

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0022s0168.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.3e-11	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a +++ + Wk+I + + +t q++s+ qky Kaladp0022s0168.2.p 55 RESWTDIEHDKFLEALHLFDRD-WKKIEAFVS-SKTVIQIRSHAQKY 99 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.79	50	104	IPR017930	Myb domain
SuperFamily	SSF46689	2.26E-15	50	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-16	53	102	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.1E-5	53	105	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-9	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-8	55	99	IPR001005	SANT/Myb domain
CDD	cd00167	5.46E-7	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVSVRTNSSS SKVQSELDPM DASMPGLSNS LQPPMDPEDM MSKKIRKPYV ISKSRESWTD 60 IEHDKFLEAL HLFDRDWKKI EAFVSSKTVI QIRSHAQKYF LKIQKNGMTE HVPPPRPKRK 120 AAHPYPQKAS KIAHMDFQMV GSIQPPAPPP QPGYALPSLS SMPSSSAEFS SWTRSSAPPL 180 DMSHISKDGG AILGATGASN FGCSSSNESS SRTWCTNMSN EPGNSDMPIR VMPDFAQVYN 240 FIGSVFDPNT SDHLQKLKTM DPINVETALL LMRNLAINLT SPEFEDHGDC DMMYSVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661807.1	1e-114	PREDICTED: protein REVEILLE 6
Swissprot	Q8H0W3	1e-88	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A438EH44	1e-114	A0A438EH44_VITVI; Protein REVEILLE 6
STRING	VIT_15s0046g02260.t01	1e-114	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-69	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0022s0168.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]