PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0022s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9775.02 Da PI: 7.5123 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ a + + + W ++a+ +g g++++++k ++ Kaladp0022s0065.1.p 11 PWTARQNKKFEVALAVFSQEtpgKWQKVAEFVG-GKSEEEVKRHYE 55 89999999**99999999889999*********.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.902 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-6 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-12 | 10 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-5 | 11 | 58 | No hit | No description |
Pfam | PF00249 | 1.0E-5 | 11 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 11 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MASMNCGSDS PWTARQNKKF EVALAVFSQE TPGKWQKVAE FVGGKSEEEV KRHYELLVKD 60 VWDIERGHLP LPKYKKASYG SSDAAEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-22 | 1 | 75 | 1 | 74 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616919.1 | 3e-28 | PREDICTED: protein RADIALIS-like 6 isoform X1 | ||||
Refseq | XP_016444191.1 | 3e-28 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | F4JVB8 | 4e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1S3XW74 | 7e-27 | A0A1S3XW74_TOBAC; protein RADIALIS-like 6 | ||||
STRING | XP_009616919.1 | 1e-27 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-29 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0022s0065.1.p |
Publications ? help Back to Top | |||
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