 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0022s0049.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 253aa MW: 28877 Da PI: 8.8623 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0022s0049.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 83.8 | 1e-26 | 9 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
k+ienk nrqvtfskRr+g++KKA ELSvLCda++a+i+fs + +klye++s
Kaladp0022s0049.1.p 9 KKIENKVNRQVTFSKRRTGLFKKATELSVLCDAQIAIIVFSGDrpDKLYEFAS 61
68***************************************874579***986 PP
|
| 2 | K-box | 79.9 | 6.1e-27 | 86 | 173 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++a+s ++e++kL+++ e Lqr+qR+llGedLe+Ls+keL+ Le+q+e sl + R +K++++ e +e l+k+e+ l e+nk+L++k +
Kaladp0022s0049.1.p 86 REAQSAYHEVQKLQAKCEALQRTQRNLLGEDLEPLSIKELHALEKQIEVSLAQTRLRKTQVVNERMESLRKQERHLGEINKKLKMKKM 173
57899*******************************************************************************9976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009911 | Biological Process | positive regulation of flower development |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0048437 | Biological Process | floral organ development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MGRGRIEHKK IENKVNRQVT FSKRRTGLFK KATELSVLCD AQIAIIVFSG DRPDKLYEFA 60
SPGQRIGKIL ERYQSMVAPP PGGLHREAQS AYHEVQKLQA KCEALQRTQR NLLGEDLEPL 120
SIKELHALEK QIEVSLAQTR LRKTQVVNER MESLRKQERH LGEINKKLKM KKMEIEAEGE 180
AYHALWNTYN ASASAGTNFP LQPTHPNLME CEMAEPVLEM GYPQNHYVRE EGTTSRANNV 240
VDELNFIQGW HC*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 5e-19 | 78 | 171 | 3 | 100 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 5e-19 | 78 | 171 | 3 | 100 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 5e-19 | 78 | 171 | 3 | 100 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 5e-19 | 78 | 171 | 3 | 100 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
