PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0022s0030.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 816aa MW: 88716.7 Da PI: 6.1536

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0022s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	120	175	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r +L+k+l+L++rqVk+WFqNrR+++k Kaladp0022s0030.1.p 120 KKRYHRHTPQQIQELEALFKECPHPDEKQRLHLSKRLNLETRQVKFWFQNRRTQMK 175 688999***********************************************999 PP
2	START	209.2	1.6e-65	329	552	1	205
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 e+a++a++el+k+a+++ep+W kss e++n++e+l++f++ + + +ea+r++gvv+ ++ lve+l+d+ +W e+++ Kaladp0022s0030.1.p 329 EVALAAMDELIKLAQSDEPLWIKSSdggrEILNREEYLRTFTPCMGmkpngYVTEASRETGVVIINSLALVETLMDSD-RWAEMFPcmia 417 6899***********************************9987799999***********************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+t+evissg g lqlm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvS++s + + + +v++++lpSg+l+e+++ng Kaladp0022s0030.1.p 418 RAATIEVISSGmggtrnGSLQLMQAELQVLSPLVPvREVTFLRFCKQHAEGVWAVVDVSIESVHDTSGGPTYVKCRRLPSGCLLEDMPNG 507 *************************************************************999****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 skvtwveh++++++ +h+l+r+lv+sgl +gak+wva l+rq + Kaladp0022s0030.1.p 508 CSKVTWVEHAEYDESEVHQLYRPLVSSGLGFGAKRWVAMLERQSQ 552 ***************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.01E-21	102	177	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-22	107	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.896	117	177	IPR001356	Homeobox domain
SMART	SM00389	1.0E-19	118	181	IPR001356	Homeobox domain
CDD	cd00086	2.12E-19	120	177	No hit	No description
Pfam	PF00046	7.8E-19	120	175	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	152	175	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.211	320	556	IPR002913	START domain
SuperFamily	SSF55961	2.26E-35	323	552	No hit	No description
CDD	cd08875	7.52E-124	324	552	No hit	No description
SMART	SM00234	2.0E-52	329	553	IPR002913	START domain
Pfam	PF01852	1.7E-57	329	552	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.4E-4	370	520	IPR023393	START-like domain
SuperFamily	SSF55961	1.24E-21	574	786	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MSFGGYLDSD LHFNSSSGNT PGKGVMLSNG VFSQQLQQQQ RLADQTFTKS IFSSPALSLA 60 LQTGLEAQGE ALRIGDSCDG AVGVRRSREE EPESRSGSDN VDGGSGEDLD AADTNPSKKK 120 KRYHRHTPQQ IQELEALFKE CPHPDEKQRL HLSKRLNLET RQVKFWFQNR RTQMKTQIER 180 HENSLLRSDN DKLRVENMSL RDAMRNPGCI HCGGPAFIGE SSLEEQQLRL ENARLRDELE 240 RVCGLASKFL GQPVSAMGNT HVLQTGSNLE LCVGSNNCHG GPSASMPFGL DFAGEVFTSS 300 GVVVLNRSTI HNSNPSGMDK TLERSMLVEV ALAAMDELIK LAQSDEPLWI KSSDGGREIL 360 NREEYLRTFT PCMGMKPNGY VTEASRETGV VIINSLALVE TLMDSDRWAE MFPCMIARAA 420 TIEVISSGMG GTRNGSLQLM QAELQVLSPL VPVREVTFLR FCKQHAEGVW AVVDVSIESV 480 HDTSGGPTYV KCRRLPSGCL LEDMPNGCSK VTWVEHAEYD ESEVHQLYRP LVSSGLGFGA 540 KRWVAMLERQ SQCLAVLMSS AVPSGDNSAI TASGRKSMLK LAQRLTNNFC AGVCASTAHK 600 WNKLSSGDAG EEDIRVMTRK SINDPGEPPG VVLTAATSVW LPVPPQRIFD FLRNECLRSE 660 WDILSNGGPM QEMAHIAKGQ DPGNCVSLLR ASAMNPSQSS MLILQETCTD VAGSLVIYAP 720 VDIPAMHVVM NGGDSAYVAL LPSGFSILPD GSNPHTRTPS PNSKPSVEGS LLTVAFQILV 780 SSLPTARLTV ESVETVSNLI SCTVQKIKAA LNCKT*

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MSFGGYLDSD LHFNSSSGNT PGKGVMLSNG VFSQQLQQQQ RLADQTFTKS IFSSPALSLA  60
LQTGLEAQGE ALRIGDSCDG AVGVRRSREE EPESRSGSDN VDGGSGEDLD AADTNPSKKK  120
KRYHRHTPQQ IQELEALFKE CPHPDEKQRL HLSKRLNLET RQVKFWFQNR RTQMKTQIER  180
HENSLLRSDN DKLRVENMSL RDAMRNPGCI HCGGPAFIGE SSLEEQQLRL ENARLRDELE  240
RVCGLASKFL GQPVSAMGNT HVLQTGSNLE LCVGSNNCHG GPSASMPFGL DFAGEVFTSS  300
GVVVLNRSTI HNSNPSGMDK TLERSMLVEV ALAAMDELIK LAQSDEPLWI KSSDGGREIL  360
NREEYLRTFT PCMGMKPNGY VTEASRETGV VIINSLALVE TLMDSDRWAE MFPCMIARAA  420
TIEVISSGMG GTRNGSLQLM QAELQVLSPL VPVREVTFLR FCKQHAEGVW AVVDVSIESV  480
HDTSGGPTYV KCRRLPSGCL LEDMPNGCSK VTWVEHAEYD ESEVHQLYRP LVSSGLGFGA  540
KRWVAMLERQ SQCLAVLMSS AVPSGDNSAI TASGRKSMLK LAQRLTNNFC AGVCASTAHK  600
WNKLSSGDAG EEDIRVMTRK SINDPGEPPG VVLTAATSVW LPVPPQRIFD FLRNECLRSE  660
WDILSNGGPM QEMAHIAKGQ DPGNCVSLLR ASAMNPSQSS MLILQETCTD VAGSLVIYAP  720
VDIPAMHVVM NGGDSAYVAL LPSGFSILPD GSNPHTRTPS PNSKPSVEGS LLTVAFQILV  780
SSLPTARLTV ESVETVSNLI SCTVQKIKAA LNCKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007220256.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	M5XQZ7	0.0	M5XQZ7_PRUPE; Uncharacterized protein
STRING	EMJ21455	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0022s0030.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]