PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0016.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 289aa    MW: 32031.9 Da    PI: 8.3097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0022s0016.1.p 14 RGPWTPKEDSLLTNYINSHGEGHWRSLPKQAGLLRCGKSCRLRWMNYL 61
                         89******************************99************97 PP
2Myb_DNA-binding50.83.7e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w++
  Kaladp0022s0016.1.p  67 RGNITAQEDDLIIRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                          7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.66961IPR017930Myb domain
SuperFamilySSF466891.09E-2911108IPR009057Homeodomain-like
SMARTSM007178.4E-121363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-241568IPR009057Homeodomain-like
CDDcd001678.38E-101661No hitNo description
PROSITE profilePS5129426.25762116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2669116IPR009057Homeodomain-like
CDDcd001671.06E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPK EDSLLTNYIN SHGEGHWRSL PKQAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TAQEDDLIIR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKIPSPP  120
KNTKRPKKPS PLVPATASKL LTEPPVEMET KHMIHQPKAV RIGPLNRNVS GLLTSSESNN  180
DTYTSSVSGE INMSSNYNSN SSEGEVDHHA NFAAAENGSA PWSTGDMYNS GIYVDDGTKA  240
PSFSDQLLGY GDEGNNTVWE KLYDEYLQLT NAGYGVELDQ SETQHLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121185110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295449.13e-82transcriptional activator Myb
TrEMBLA0A0A8WJ387e-81A0A0A8WJ38_FRAVE; Transcription factor MYB 12
STRINGXP_004306648.11e-81(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-65myb domain protein 15