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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Kaladp0020s0216.3.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family |
bHLH |
Protein Properties |
Length: 555aa MW: 61759.5 Da PI: 5.0899 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Kaladp0020s0216.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 45.5 | 1.3e-14 | 356 | 402 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+
Kaladp0020s0216.3.p 356 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 402
7999**********************8.....8*****************95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 555 aa
Download sequence Send
to blast |
MEIMKTDISD FLDLTICILD FFNVDHQSAR VQTVLCIPLV DGVVEFGSTE LIHEDLGLVR 60 HVKTFFNDYN QSQHTPPPKP ALSGHSTSNP TASSDHFHSQ PLLAMYNAGM SSNNNHANSH 120 NQNDEENENE EEEEEGPGLD SEAETARVSG RVGAEVSEFM HMEMSDQDIR VGSPEDASNN 180 LEPDVNLLSA SRFKNNKDDH FTSESYKIES ARRWALMQDQ MRSGAVQIQP PPFSETTPLL 240 EDLTQEDSHY SHTVSSILQN QRQPPLPDSS AGILILSADS AFAKWTLHGD QVTATTIIGG 300 AGAGSQWLLK YILFTIPYLH AKYHEENEPS KSVDMSEAAQ RLKKGAGTPQ EDMSANHVLA 360 ERRRREKLNE RFVILRSLVP FVTKMDKASI LGDTIEYLKQ LRRKIQDLEV KTKQMEVEQR 420 SGLTSQERTW SGSGSDKKKM RAVEGTGTPK PVKVVEPPPP RAVEPLAIMD ANTVQVSIIE 480 TDALVELQCP HREGLLLDVM MKLRELRIEV TAVQSSVTDG SFVAELRAKV KENVNGKKMK 540 IAEVKRAICE IIPQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 356 | 418 | 8 | 75 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 360 | 365 | ERRRRE |
2 | 361 | 366 | RRRREK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |