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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Kaladp0020s0186.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family |
bHLH |
Protein Properties |
Length: 444aa MW: 48583.6 Da PI: 6.6815 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Kaladp0020s0186.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.7 | 4.2e-13 | 312 | 358 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq
Kaladp0020s0186.1.p 312 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 358
799***********************66......*****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MGDKFWVSDE ERAAVEAVVG AEACQFLISP GSESGFSELA ISSSRGDSSA RHALSRLVAG 60 DSDWNYSILW RGSRTRGNGS ALVWGEGHCG GAVAGNPSLS EDEKLRRERV VRLIQKRFGK 120 SFDQRCLVSN LEMFYLVSMC YSFSSGSVYG PVQVYEHGRA VWAVENCAAQ YESRWHLAKL 180 AGLKTVAFVP VKAGVVEIGS VASIPEEKKV LRMIEGLFGS SDLVQSKIFG EDLSLSASNS 240 RSMSISFSPK VEEELGLGSE EGGIGVSHFY GSSVNGRAGS LGFEQFKDEE GDDRKPRKRG 300 RKPANGREQA LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA ISYITDLQSK 360 IRILENEKDA PNVDKQSVAE FEFQERQDDA IVRVGYPLDA HPVSGLCDVS ITDNGKVVHT 420 FSIRNHGAPA EHVKEKLLDA LSK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-27 | 306 | 368 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 293 | 301 | RKPRKRGRK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |