PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0144.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 451aa    MW: 51054.3 Da    PI: 6.832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-15144234199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++ ps+ ++   + lpk+f +++   ++ +  +tl de+ + + v++      +r  l++GW++F+  n+L egD++vF+l++ sef
  Kaladp0020s0144.1.p 144 FLKTMQPSHCSRGFFVKLPKNFRNDYL--PNHDALMTLVDEHEEHYVVTF----LAERLALSGGWRGFCTTNKLLEGDILVFQLTSPSEF 227
                          89********************87774..446679***************....445588***********************9887888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Kaladp0020s0144.1.p 228 --RVYIVRA 234
                          ..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-19138235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21141235IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-19142233No hitNo description
PROSITE profilePS5086313.493144235IPR003340B3 DNA binding domain
SMARTSM010193.9E-18144235IPR003340B3 DNA binding domain
PfamPF023622.3E-13144234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNDSPRIKHE DMVMEAPHPR QIQDSCLDID PDDQDADDDE DYDEMPISFL STSLRPNRDS  60
SSPTMKRRKP KPLEVKRKLF KIVKHPLGHS REIHPEGVHK LVKPKAVRIR VKKLACHSTT  120
DTKSSVMERA EEVQANLAAD QPSFLKTMQP SHCSRGFFVK LPKNFRNDYL PNHDALMTLV  180
DEHEEHYVVT FLAERLALSG GWRGFCTTNK LLEGDILVFQ LTSPSEFRVY IVRANTLTEV  240
DGALGLLNLD TKPATSRRNA SSGADIEQLK SIESFTILVN GVNIESELPT HYKAVYFELC  300
SSQQALLHDG LLKNIGPKLA SEIISETVKI ADTVRACKLS TPHEDYTIWD RTLEAFEMLG  360
MEVAFIRARL KRIASIAFDS EEARESKLFR ETVREKACVD EEITSLHLKL VELRRACRRL  420
DAGAEALRAS AEKHERRFQK AVSAPWLPET *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16576KRRKPKPLEVKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-29B3 family protein