PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0045.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 323aa    MW: 35294.7 Da    PI: 8.6416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-1358102147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT  E++ +v+a +++  + Wk+I + +g  +t  q++s+ qky
  Kaladp0019s0045.1.p  58 RESWTDMEHDMFVEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 102
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1553108IPR009057Homeodomain-like
PROSITE profilePS5129412.59453107IPR017930Myb domain
TIGRFAMsTIGR015572.8E-1756105IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-656108IPR009057Homeodomain-like
SMARTSM007174.2E-1057105IPR001005SANT/Myb domain
PfamPF002495.4E-1058102IPR001005SANT/Myb domain
CDDcd001679.46E-860103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVSVHPNSAK AQSGSAYFHP MDASLPGLNN SLQPQPPPMD PDDSSKKIRK PYVISKSRES  60
WTDMEHDMFV EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG MTEHVPPPRP  120
KRKAAHPYPQ KASKIAHADS QFAGSVQPTT PKVHPGYALP GLNSISSSST EFSSWTHSSA  180
PPLDMSHISK NGGAMLGATG AGNFGCSSSN ESSSRTWCAN VSNEQGNSST PIRFMPDFAQ  240
VYNFIGSVFD PDTSGHLQKL KTMDPINVET ALLLMRNLAI NLTSPEFEDH RQLLESYDVL  300
PGKGKAFDNI YPGIHQSAIS TS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261345.11e-123PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W37e-91RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U8A8B11e-121A0A1U8A8B1_NELNU; protein REVEILLE 6 isoform X2
STRINGXP_010276889.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-74MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]