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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Kaladp0019s0030.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family |
bHLH |
Protein Properties |
Length: 336aa MW: 37453.6 Da PI: 6.791 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Kaladp0019s0030.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.2 | 6.2e-13 | 154 | 199 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++N++f L ++P + +K++Ka++Le+A++++k+Lq
Kaladp0019s0030.1.p 154 HIKAERKRREKLNQRFIALSAVIPGL-----TKMDKATVLEEATKFVKQLQ 199
999**********************9.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDQDQIFTSQ WMVNSHADLS GPIPMEAAFP DALQHSNLLF DYPLPPIFGT TMNDFQSNNP 60 VEHLATDTWR SLDVSNSDSA ADAVSFLNSA WPNPTGVAWP KREYHCYDSQ VQQFPNNEYT 120 IWNENYGSKA GPEAKSKAIH NISAATRSSE AADHIKAERK RREKLNQRFI ALSAVIPGLT 180 KMDKATVLEE ATKFVKQLQE RIKKLEKQTK SGTVIESAVV VKKTLLVIND NNMPGFSNET 240 SFNERTLPDE SLPEIEVRFC HRKVLIRVHC DRKKGVAEKI LSEIGNLHMT VLNNSVFAFG 300 SSAINVVVIA KMNPECSMAE TELVKTLCVA LKSLM*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_B | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_E | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_F | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_G | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_I | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_M | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
5gnj_N | 2e-12 | 150 | 206 | 5 | 61 | Transcription factor MYC2 |
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 157 | 162 | ERKRRE |
2 | 158 | 163 | RKRREK |