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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Kaladp0019s0029.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family |
bHLH |
Protein Properties |
Length: 343aa MW: 38632.8 Da PI: 7.6268 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Kaladp0019s0029.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.1 | 5.7e-12 | 158 | 203 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ ++f L ++P + +K++Ka+ Le A++Y+k+Lq
Kaladp0019s0029.1.p 158 HIKAERKRREKLSQRFIALSAVIPGL-----TKMDKATLLEDATKYVKQLQ 203
999**********************9.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MDQVIRIRYL PASQWMVNSH ADLSGSIPME PAFPDAFQPS YLLFDYPQPP IFGTTMNDFQ 60 SNNPVENLAT DTWRSRDVST SDSASDAVSF SYSAWPNPTG VAWPKREYHC YDNQVQQFPN 120 NEYTIWNENY VSKAGPEAKR KAIRNISAAT RSSEAEDHIK AERKRREKLS QRFIALSAVI 180 PGLTKMDKAT LLEDATKYVK QLQEQIKKLE KQTKSPTMIE SAVVVKKTLL EINDNNMPGF 240 SNETSFNERT LLDESLPEIE ARFCDRKVLI RVHCDRKKGV AEKILSEIGK LHMTVLNSSV 300 LAFGSSAIIV AVIAKVKFEF NATESHHNSI NTNVPNLVTT LQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 157 | 210 | 8 | 61 | Transcription factor MYC2 |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 161 | 166 | ERKRRE |
2 | 162 | 167 | RKRREK |