PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0129.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 154aa MW: 17750.6 Da PI: 10.3589 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.2 | 2.7e-17 | 19 | 101 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +++p kf++ + +e s tl +sg sW+ k+ + + g+++l+ GW+eF k+n Lk ++++vF+++g+++f +v++f++ Kaladp0018s0129.1.p 19 SIDE-KMRIPPKFVNLIW--EELSSVATLVGPSGDSWSTKV--CHSEGHVYLKCGWQEFYKDNLLKGNEMLVFTYKGKMRF--HVQIFDT 101 3444.49*******6663..4567799**************..9********************************99999..*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.16E-15 | 9 | 100 | No hit | No description |
PROSITE profile | PS50863 | 12.675 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-23 | 10 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-22 | 10 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.6E-14 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-15 | 12 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MRMGTCVGKR FFKLMFGDSI DEKMRIPPKF VNLIWEELSS VATLVGPSGD SWSTKVCHSE 60 GHVYLKCGWQ EFYKDNLLKG NEMLVFTYKG KMRFHVQIFD TSAVERMQVV VSKPDDKKDS 120 AVQKRKHDEK NDSTVPKRQR GRPRKHPISP PKF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 7e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0129.1.p |