PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23350.7 Da PI: 9.5551 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.2e-13 | 124 | 196 | 20 | 98 |
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +++h + ++e+ ++tlede+g++ k+ s r l++GW+ F +++L +gD +vF+l++ ++f +v ++r Kaladp0018s0046.1.p 124 KPMVQSHAHMPKEDEMITLEDEDGNESPSKY--LADSTR--LSGGWRCFTLDHELVDGDALVFQLIRPTKF--KVYIIR 196 777888866677888****************..777655..*************************97777..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-18 | 115 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-14 | 117 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-17 | 120 | 196 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 122 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-11 | 124 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.375 | 140 | 198 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVVSATSNYE KLRRQRLEEK KKRMEEVNLL NLSKSLSAAT PKSSPAKHRK PKSARKEVNL 60 SAVRRFRRMA GKSRPDYKEG MRLMLSREDL LIHVYASHES RMSAVERAEQ LESELGSEYP 120 CFVKPMVQSH AHMPKEDEMI TLEDEDGNES PSKYLADSTR LSGGWRCFTL DHELVDGDAL 180 VFQLIRPTKF KVYIIRVNEH EN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279758.1 | 1e-74 | B3 domain-containing protein At3g19184-like isoform X2 | ||||
Swissprot | Q1G3M3 | 1e-53 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC1 | 2e-73 | F6HQC1_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00620.t01 | 3e-74 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0046.1.p |
Publications ? help Back to Top | |||
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