PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0222.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 62746.7 Da PI: 5.9592 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.4e-13 | 332 | 376 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++N+++ +Lr l+P + Kl+Ka+iL A++Y+k+L+ Kaladp0016s0222.6.p 332 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYVKQLK 376 589*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.2E-15 | 17 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.844 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.87E-14 | 328 | 380 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-17 | 329 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 331 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-16 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 333 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.392 | 440 | 518 | IPR002912 | ACT domain |
CDD | cd02116 | 0.00324 | 441 | 498 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MKQSEVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLNQDQ RFLELMGCCC AGADNEQDKL 60 KFLVSPQLPC RDTVFQHQRT ECCDHLCHLP SSVPLNSEFD LISSNLFDSS KIRFQILTRV 120 LFFCSIYAEA FFSSQPRWLN VNLNTFSDPQ ALAKEVVGTQ VLIPVLGGLV ELFVAKQVAE 180 DKNVVDFIAA QCAIPLELDA LLTSSLQTRT NPAEENPQPG AERNHASPSN SYQFHQPVAN 240 NTNQQACKMS SPKGFSQQFN CDSAAENEPR NIDAMMMSGG SGSASDMPSQ SKDGVRLEAG 300 RSDSTSDCSD QIDDEDEAKC RRRNGKGQSK NLEAERRRRK KLNERLYKLR ALVPIISKLD 360 KASILVDAID YVKQLKKQVE ELRKELEQES DNKGDQTPAD SVSEFVAPNT RNVAKPMGHE 420 KVQQMEPQVE VTPVDGSKFF IRVFCEQKPG GFVRLLEALS SLGLEVTNVN VTSYRMLVSN 480 VFQVEMTRDD IDDHHVAADD LRKSLLELTQ IPVEAPWPDP LPDTTSNMPE YGVRADNHFP 540 HHHALLNHHT SPYHFHHN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 340 | RRRNGKGQSKNLEAERRRRKK |
2 | 334 | 341 | ERRRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841495.1 | 1e-140 | PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
TrEMBL | A0A2I4GCB4 | 1e-139 | A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
STRING | EOX97629 | 1e-132 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0222.6.p |