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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 1047aa MW: 114934 Da PI: 7.6601 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.8e-40 | 125 | 202 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kaladp0016s0065.1.p 125 TCQVDSCMVDLSIAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 202 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.9E-32 | 118 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.282 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-36 | 124 | 204 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.9E-29 | 126 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.7E-5 | 827 | 941 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.29E-6 | 828 | 931 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.96E-5 | 834 | 941 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1047 aa Download sequence Send to blast |
MARKRDLPYQ QQELMIDQPH HPSGGLNSSR DYWSSNRWNW DCTRFVAQQV DGDAMNLDAP 60 VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGSGN 120 GNHTTCQVDS CMVDLSIAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD 180 EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLA ALARAQGNQD 240 NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQSGSSANS 300 SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT KSADTYQPDP RVLRKRTILD 360 FSSVGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS 420 SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTV SFDLFGGSKK 480 GVEVDFCEGS PNQVGYASPV SAYSPSSSTC GTQDLTGRIL FKLFDKDPSH LPVALRSEIL 540 AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEENLL EQVSRLLQRT DIDIWRDGRF 600 LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH 660 CTYMGGYITK DICNTAVHDC TCDRTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII 720 ADSTICQELR QLEFEFETDP RLNDAMSEVQ ESDVLRPKAE VLHFLNELGW LFQTKDSSNT 780 LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGKI PMEVSEMVSG IQLLHRAVKR 840 RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CTGPGGLTPL HIAACTSGLE DVVDALTNDP 900 TELGLCCWES QLDESGQSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEVNETMEQA 960 WVEPSPAASH VTKHKAGSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV 1020 CLYFRGYPYT GMVSPFTWEK LDYATI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 116 | 199 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 835 | 840 | RAVKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372667.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
TrEMBL | F6I6X1 | 0.0 | F6I6X1_VITVI; Uncharacterized protein | ||||
STRING | XP_009372667.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0065.1.p |