PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 288aa MW: 32769.9 Da PI: 7.8321

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.6e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl Kaladp0016s0001.1.p 17 KGAWSEEEDALLRECIGKYGEGKWHQVPLKAGLNRCRKSCRLRWLNYL 64 79********************************************97 PP
2	Myb_DNA-binding	47.7	3.6e-15	70	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E +l+++++k+lG+ +W++Ia +++ gRt++++k++w+++l Kaladp0016s0001.1.p 70 RGEFSMDEADLIIRLHKLLGNSRWSLIAGRLP-GRTANDVKNYWNTHL 116 899***************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.155	12	68	IPR017930	Myb domain
SuperFamily	SSF46689	3.52E-27	14	112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-21	15	67	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-15	17	64	IPR001005	SANT/Myb domain
CDD	cd00167	3.98E-10	19	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-22	68	119	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.196	69	120	IPR017930	Myb domain
SMART	SM00717	1.0E-12	69	118	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-14	70	116	IPR001005	SANT/Myb domain
CDD	cd00167	1.60E-10	72	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRRMAADHGH RLYGVRKGAW SEEEDALLRE CIGKYGEGKW HQVPLKAGLN RCRKSCRLRW 60 LNYLKPNIKR GEFSMDEADL IIRLHKLLGN SRWSLIAGRL PGRTANDVKN YWNTHLGKKT 120 MLRLQALMNS AAAADYQTKV IKPRPRTFSK TLVQCMRSGQ QQQQGQHFCT NNGSKSSTIK 180 DDAVDLISGK DDDGVDKQIQ WWKSLLDDQL SDQELAALAS GSCGLVEEEQ AGYELPQPPV 240 DDRSGYKIYE ERPKTDFTNE LSFDIELWDF FTDDDQWQTS SGLIQGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-20	17	120	7	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256541.1	8e-74	PREDICTED: transcription factor MYB113-like
Swissprot	Q9FNV9	6e-63	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A3G8FWW7	9e-74	A0A3G8FWW7_9SOLA; MYB transcription factor AN2
STRING	XP_010062250.1	2e-72	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-64	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Kaladp0016s0001.1.p

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]