PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0015s0142.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 90166.1 Da PI: 6.512

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0015s0142.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	140	195	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r +L+k+l+L++rqVk+WFqNrR+++k Kaladp0015s0142.1.p 140 KKRYHRHTPQQIQELEALFKECPHPDEKQRLQLSKRLNLETRQVKFWFQNRRTQMK 195 688999***********************************************999 PP
2	START	208.3	2.9e-65	349	572	1	205
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 e+a++a++el+k+a+ +ep+W k s e++n++e+ ++f++ + + +ea+r++gvv+ ++ lve+l+d++ +W e+++ Kaladp0015s0142.1.p 349 EVALAAMDELIKLAQTDEPLWIKGSeggrEILNREEYKRTFTPCMGmkpngYVTEASRETGVVIINSLALVETLMDSN-RWAEMFPgmia 437 6899*******************9***********9987799999***********************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+t+evis+g g lqlm +elq+lsplvp R+++f+R+++q+ +g+w++vdvS++s ++ + + +v++++lpSg+l+e+++ng Kaladp0015s0142.1.p 438 RAATIEVISNGmggtrnGSLQLMHTELQVLSPLVPvREVTFLRFCKQHAEGVWAVVDVSIESVRNSSGAPAYVKCRRLPSGCLVEDMPNG 527 **************************************************************99****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +skvtwveh++++++ +h+l+r+l++sgl +ga++wvatlqrq + Kaladp0015s0142.1.p 528 YSKVTWVEHAEYDESEVHQLYRPLLSSGLGFGAQRWVATLQRQSQ 572 ****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.76E-21	127	197	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-22	130	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.123	137	197	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	138	201	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-19	140	195	IPR001356	Homeobox domain
CDD	cd00086	1.64E-18	142	197	No hit	No description
PROSITE pattern	PS00027	0	172	195	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.554	340	576	IPR002913	START domain
CDD	cd08875	3.69E-125	344	572	No hit	No description
SuperFamily	SSF55961	4.81E-34	344	573	No hit	No description
SMART	SM00234	7.2E-54	349	573	IPR002913	START domain
Pfam	PF01852	4.1E-57	349	572	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.2E-4	407	538	IPR023393	START-like domain
SuperFamily	SSF55961	1.65E-22	601	827	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MSFGGFIDST ASATDGSGPA RFVSDLHFNS SSSDSPSKGM MLSNGVFSPQ QRLVGQTFSK 60 SIFSSPALSL ALQTGLEAQG EVVRIGESYD GGGGGGVSGG VGGRRSREEE HESRSGSDNM 120 DGGSADDLDA ADINPSKKKK KRYHRHTPQQ IQELEALFKE CPHPDEKQRL QLSKRLNLET 180 RQVKFWFQNR RTQMKTQIER HENSMLRSEN DKLRAENMSL REAMRNPMCV HCGGPAIIGE 240 SSLEEQHLRL ENARLRDELE RVCGLASKFL GQPVSALGNG HMLQMCSNLE LGVGNNNCNG 300 GLSTSLPFGP DFGADMFSSS GAVAVNRSAI NNYNATGMDK TPERSVLLEV ALAAMDELIK 360 LAQTDEPLWI KGSEGGREIL NREEYKRTFT PCMGMKPNGY VTEASRETGV VIINSLALVE 420 TLMDSNRWAE MFPGMIARAA TIEVISNGMG GTRNGSLQLM HTELQVLSPL VPVREVTFLR 480 FCKQHAEGVW AVVDVSIESV RNSSGAPAYV KCRRLPSGCL VEDMPNGYSK VTWVEHAEYD 540 ESEVHQLYRP LLSSGLGFGA QRWVATLQRQ SQCLAILMSS AVPSGDNSAI TASGRKSMVK 600 LAQRLTNNFC AGVCASTVHK WNKLSSGNVG DDIRVMTRKS VNDPGEPPGI VLSAATSVWL 660 PVPPQRIFDF LRNESLRSEW DILSNGGPMQ EMARIAKGQD HGNCVSLLRA GAMNPNQSSM 720 LILQETCTDA AGSLVVYAPV DIPAMHVVMN GGDSAYVALL PSGFSIVPDG SSSTVRPRGS 780 NPDGPVEGSL LTVAFQILVS SLPTAKLTVE SVDTVSNLIS CTVQKIKAAL NCEN*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MSFGGFIDST ASATDGSGPA RFVSDLHFNS SSSDSPSKGM MLSNGVFSPQ QRLVGQTFSK  60
SIFSSPALSL ALQTGLEAQG EVVRIGESYD GGGGGGVSGG VGGRRSREEE HESRSGSDNM  120
DGGSADDLDA ADINPSKKKK KRYHRHTPQQ IQELEALFKE CPHPDEKQRL QLSKRLNLET  180
RQVKFWFQNR RTQMKTQIER HENSMLRSEN DKLRAENMSL REAMRNPMCV HCGGPAIIGE  240
SSLEEQHLRL ENARLRDELE RVCGLASKFL GQPVSALGNG HMLQMCSNLE LGVGNNNCNG  300
GLSTSLPFGP DFGADMFSSS GAVAVNRSAI NNYNATGMDK TPERSVLLEV ALAAMDELIK  360
LAQTDEPLWI KGSEGGREIL NREEYKRTFT PCMGMKPNGY VTEASRETGV VIINSLALVE  420
TLMDSNRWAE MFPGMIARAA TIEVISNGMG GTRNGSLQLM HTELQVLSPL VPVREVTFLR  480
FCKQHAEGVW AVVDVSIESV RNSSGAPAYV KCRRLPSGCL VEDMPNGYSK VTWVEHAEYD  540
ESEVHQLYRP LLSSGLGFGA QRWVATLQRQ SQCLAILMSS AVPSGDNSAI TASGRKSMVK  600
LAQRLTNNFC AGVCASTVHK WNKLSSGNVG DDIRVMTRKS VNDPGEPPGI VLSAATSVWL  660
PVPPQRIFDF LRNESLRSEW DILSNGGPMQ EMARIAKGQD HGNCVSLLRA GAMNPNQSSM  720
LILQETCTDA AGSLVVYAPV DIPAMHVVMN GGDSAYVALL PSGFSIVPDG SSSTVRPRGS  780
NPDGPVEGSL LTVAFQILVS SLPTAKLTVE SVDTVSNLIS CTVQKIKAAL NCEN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661562.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	F6I316	0.0	F6I316_VITVI; Uncharacterized protein
STRING	VIT_15s0048g02000.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Kaladp0015s0142.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]