PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s1344.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 414aa MW: 45098.1 Da PI: 7.1916

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s1344.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112	8.5e-35	36	153	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + Kaladp0011s1344.1.p 36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwhptatttiptatttaT------- 118 79**************************************************************9988888754444322220....... PP TCP 74 eaesssssasnsssg.......kaaksaakskksqksaa 105 + ss+ ++ + + a++ + +++++++ + Kaladp0011s1344.1.p 119 ----NASSQPEQMVHghvansmEDANDYTIQHQQHERVQ 153 ....11222211111233322222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-35	36	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.295	38	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MGERNSYRQT TSRLGMRNSG GGEIIEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60 HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK AAIDELAELP PWHPTATTTI PTATTTATNA 120 SSQPEQMVHG HVANSMEDAN DYTIQHQQHE RVQNENNPSF LPPSMDSDSI ADTIKTFFPM 180 GASTEPTSGS GMQFYPPDLL SRTSSSSQNN QDLRLSLQSF QDSQFLHSHH HHHHHQQHPG 240 QTHQAIFSGN QLGFDASSGG GGWSDHQSAD INRFHRMMTW NNTGGDTAGG SGGGGGGSGG 300 SSGFMFNSLP PPPLSQPSLQ QLFGQSGQFF TQRGPLQSSN TSSVRAWIDQ PIADHHQHHQ 360 TLHHHPATLS GIGHFQNPGV FSGFRIPARI QGDDEEQDGI HNKPSSASSD SRH*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MGERNSYRQT TSRLGMRNSG GGEIIEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK AAIDELAELP PWHPTATTTI PTATTTATNA  120
SSQPEQMVHG HVANSMEDAN DYTIQHQQHE RVQNENNPSF LPPSMDSDSI ADTIKTFFPM  180
GASTEPTSGS GMQFYPPDLL SRTSSSSQNN QDLRLSLQSF QDSQFLHSHH HHHHHQQHPG  240
QTHQAIFSGN QLGFDASSGG GGWSDHQSAD INRFHRMMTW NNTGGDTAGG SGGGGGGSGG  300
SSGFMFNSLP PPPLSQPSLQ QLFGQSGQFF TQRGPLQSSN TSSVRAWIDQ PIADHHQHHQ  360
TLHHHPATLS GIGHFQNPGV FSGFRIPARI QGDDEEQDGI HNKPSSASSD SRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-21	43	96	1	54	Putative transcription factor PCF6
5zkt_B	8e-21	43	96	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082737.1	1e-139	transcription factor TCP4-like
Refseq	XP_011082738.1	1e-139	transcription factor TCP4-like
Swissprot	Q8LPR5	1e-102	TCP4_ARATH; Transcription factor TCP4
TrEMBL	A0A2K2CA04	1e-132	A0A2K2CA04_POPTR; Uncharacterized protein
STRING	POPTR_0001s38480.1	1e-133	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	1e-77	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	Kaladp0011s1344.1.p

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]