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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kaladp0011s1344.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
TCP |
| Protein Properties |
Length: 414aa MW: 45098.1 Da PI: 7.1916 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0011s1344.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 112 | 8.5e-35 | 36 | 153 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec 73
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ +
Kaladp0011s1344.1.p 36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwhptatttiptatttaT------- 118
79**************************************************************9988888754444322220....... PP
TCP 74 eaesssssasnsssg.......kaaksaakskksqksaa 105
+ ss+ ++ + + a++ + +++++++ +
Kaladp0011s1344.1.p 119 ----NASSQPEQMVHghvansmEDANDYTIQHQQHERVQ 153
....11222211111233322222222222222222222 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MGERNSYRQT TSRLGMRNSG GGEIIEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK AAIDELAELP PWHPTATTTI PTATTTATNA 120
SSQPEQMVHG HVANSMEDAN DYTIQHQQHE RVQNENNPSF LPPSMDSDSI ADTIKTFFPM 180
GASTEPTSGS GMQFYPPDLL SRTSSSSQNN QDLRLSLQSF QDSQFLHSHH HHHHHQQHPG 240
QTHQAIFSGN QLGFDASSGG GGWSDHQSAD INRFHRMMTW NNTGGDTAGG SGGGGGGSGG 300
SSGFMFNSLP PPPLSQPSLQ QLFGQSGQFF TQRGPLQSSN TSSVRAWIDQ PIADHHQHHQ 360
TLHHHPATLS GIGHFQNPGV FSGFRIPARI QGDDEEQDGI HNKPSSASSD SRH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G53230.1 | 1e-77 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
| Publications
? help Back to Top |
- Schommer C, et al.
Control of jasmonate biosynthesis and senescence by miR319 targets.
PLoS Biol., 2008. 6(9): p. e230
[PMID:18816164] - Ju Y, et al.
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments.
Plant Cell, 2016. 28(9): p. 2131-2146
[PMID:27468890] - Challa KR,Aggarwal P,Nath U
Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis.
Plant Cell, 2016. 28(9): p. 2117-2130
[PMID:27597774] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
J. Exp. Bot., 2016. 67(22): p. 6473-6480
[PMID:27838638] - Sun X, et al.
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor.
Plant Biotechnol. J., 2017. 15(10): p. 1284-1294
[PMID:28233945] - Kubota A, et al.
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.
PLoS Genet., 2017. 13(6): p. e1006856
[PMID:28628608] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Vadde BVL,Challa KR,Nath U
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.
Plant J., 2018. 93(2): p. 259-269
[PMID:29165850] - Challa KR,Rath M,Nath U
The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways.
PLoS Genet., 2019. 15(2): p. e1007988
[PMID:30742619]
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