PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1265.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25878.7 Da PI: 10.3539 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ps+v+ +l l +f+++h + + ++tl +e+ +++ + ++ + l++GWk+F+ a++L +gD +vF+l++++ f Kaladp0011s1265.2.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPS--HDSEVTLINEDDEEYPTIY--LPRKTG--LSGGWKGFAVAHDLADGDALVFQLIKSTAF 212 89************************423..3348***************..555544..*************************98888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kaladp0011s1265.2.p 213 --KVYITR 218 ..777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-21 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-23 | 122 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-25 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 5.6E-13 | 129 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.053 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL KTPPMKQRKP RTLEKKMVPV 60 RRSDRLSGKP GPVYLEVDVA RYERVTIPRR ISKARDLSNR VYASEEERSY SIKRAEEVHA 120 ALDATHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPSHDS EVTLINEDDE EYPTIYLPRK 180 TGLSGGWKGF AVAHDLADGD ALVFQLIKST AFKVYITRAS GFKKTVA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520114.1 | 6e-97 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-76 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A251REU1 | 3e-94 | A0A251REU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_010520114.1 | 2e-96 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-79 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1265.2.p |
Publications ? help Back to Top | |||
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