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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 553aa MW: 60958.4 Da PI: 6.5956 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.3 | 9.1e-109 | 175 | 551 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl 83 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La r++ v+ l + s+++ s++++ l+l Kaladp0011s1026.1.p 175 LVQLLIACAEAVACRDKSHASALLSELRAHAVVFGSSFQRVASCFVQGLADRMTLLVQPLGSNGFRSPATM-LglmegveSDKKAEGLSL 263 689****************************************************7777776554444432.235666556666666677 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLak 167 +e++P ++f+h++aN+ Ilea+ege+ vH++D++++ Gl QW L+++La+R+ gpp +l++T++g ++++l+++g L+ Kaladp0011s1026.1.p 264 VYELCPQIQFGHFVANSSILEAFEGESSVHVVDLGMTLGLpgghQWRQLIHSLANRATGPPkgRLKVTAIGL----HAQKLQAIGGELEV 349 **********************************9997644444*************9999889********....99************ PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 +A++++v++ f+ + k le++++e++++ ++E+l+Vn+++qlh +++es + +vL+++ +l+Pk +v+veq+++hn++ Fl rf Kaladp0011s1026.1.p 350 YAHSMNVNMVFSG-INKCLENIRPEDFDIVEDEVLVVNSIFQLHCVVKESRGALN---SVLRIIHKLQPKTLVLVEQDSNHNGPFFLGRF 435 *************.7********************************88877777...8******************************* PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346 +eal+yysa+fdsl+a lp+ + r+k+E+++++++i+n+v+ceg er+erhe++ +Wr+r+++aGF pvp++ + +qak +++vk Kaladp0011s1026.1.p 436 MEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEQIKNIVSCEGPERVERHERVDQWRRRMSRAGFLPVPIK--MISQAKQWMARVKlC 523 ***********************************************************************96..6899*********99 PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 dg+++ ee+g+l+lgWk++p+v++S+W+ Kaladp0011s1026.1.p 524 DGHTIVEEKGCLILGWKSKPIVAASCWK 551 ***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.126 | 149 | 532 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-106 | 175 | 551 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MANELAATNS FSEEISYHDD DDQFKALDLC LSALACYPYP FLPIPENSVA TSFSTTNNGN 60 AAAGATFLMP EEPGTGRDSK RLKRSFSVSE SLGSSDTNGC SSSYYGSASV EMSSRSLVRS 120 SSVTSLPRLH FRDHIWTYTQ RYLAAEAVEE AVSSFEAENG ISGEDHQGNK DGMRLVQLLI 180 ACAEAVACRD KSHASALLSE LRAHAVVFGS SFQRVASCFV QGLADRMTLL VQPLGSNGFR 240 SPATMLGLME GVESDKKAEG LSLVYELCPQ IQFGHFVANS SILEAFEGES SVHVVDLGMT 300 LGLPGGHQWR QLIHSLANRA TGPPKGRLKV TAIGLHAQKL QAIGGELEVY AHSMNVNMVF 360 SGINKCLENI RPEDFDIVED EVLVVNSIFQ LHCVVKESRG ALNSVLRIIH KLQPKTLVLV 420 EQDSNHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE QIKNIVSCEG 480 PERVERHERV DQWRRRMSRA GFLPVPIKMI SQAKQWMARV KLCDGHTIVE EKGCLILGWK 540 SKPIVAASCW KC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-55 | 169 | 550 | 13 | 378 | Protein SCARECROW |
5b3h_A | 3e-55 | 169 | 550 | 12 | 377 | Protein SCARECROW |
5b3h_D | 3e-55 | 169 | 550 | 12 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009359535.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A192ADG0 | 0.0 | A0A192ADG0_PYRPY; DELLA protein RGL2 | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-78 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1026.1.p |