PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0944.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 535aa MW: 59401.5 Da PI: 7.7521 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 424.7 | 7.5e-130 | 164 | 534 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++ L++cA a+s+++ +aq l+a+l++++s +g+p+qRl ay++e+L a+ ++ +s++yk l+++e + ss+ ++++++++ev+P+ Kaladp0011s0944.2.p 164 LRQGLVDCALAISEDNRPKAQYLIAELEQMVSVSGEPIQRLGAYVLEGLIAKFNSAGSSIYKVLKCKEPA---SSDLFSYMHILYEVCPY 250 5788*****************************************************************9...99*************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea++ e+rvHiiDf i+qG QW++L++a+a+Rp+gpp++RiT ++++ s + ++g+rL+k+A++++vpfef Kaladp0011s0944.2.p 251 FKFGYMSANGAIAEAMKDEDRVHIIDFRIGQGSQWLTLIRAFAARPGGPPHIRITSIEDSISAyaRGGGQGAVGKRLSKLAQSFKVPFEF 340 ***********************************************************8777878888999****************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + ++++e + +L ++pgEalaVn+++ lh+l+desvs++++rd++L+lvk+lsPkvv++veqe+++n++ F+ rfle+++yy+a+f Kaladp0011s0944.2.p 341 HSASMSDCE-SQQVNLGIRPGEALAVNFAFILHHLPDESVSTHNHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFLETMSYYTAMF 429 **5444444.456689************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s++a+lpr++++ri vE+++l++++vn++acegaer++rhe l+kW++r+ +aGFkp+pls+ +++++k+ll+k++++ y++ee++g+l Kaladp0011s0944.2.p 430 ESIDATLPRNHKDRIHVEQHCLAKDVVNIIACEGAERVKRHELLGKWKSRFAMAGFKPYPLSSLVNATIKALLEKYSDK-YKLEERDGAL 518 *****************************************************************************55.********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW++r+Lv +aW+ Kaladp0011s0944.2.p 519 YLGWMNRALVGSCAWT 534 ***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.957 | 138 | 515 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-127 | 164 | 534 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MSKRSYRKSM PEAHTYLVPQ LHQLDHQLYC NDSNPSARFT VQNPNGGRVL IPATYARYCT 60 LESSSTTRSS NNASSVSFSD GSPLSQQDCS SYQLDQHQVL EKGYGSPISG SCLTDDKHEL 120 RNKLMELETV MLGPDSDVID RSGVASPGID SWRQMMGIAS KQDLRQGLVD CALAISEDNR 180 PKAQYLIAEL EQMVSVSGEP IQRLGAYVLE GLIAKFNSAG SSIYKVLKCK EPASSDLFSY 240 MHILYEVCPY FKFGYMSANG AIAEAMKDED RVHIIDFRIG QGSQWLTLIR AFAARPGGPP 300 HIRITSIEDS ISAYARGGGQ GAVGKRLSKL AQSFKVPFEF HSASMSDCES QQVNLGIRPG 360 EALAVNFAFI LHHLPDESVS THNHRDRLLR LVKGLSPKVV TLVEQESNTN TAAFFPRFLE 420 TMSYYTAMFE SIDATLPRNH KDRIHVEQHC LAKDVVNIIA CEGAERVKRH ELLGKWKSRF 480 AMAGFKPYPL SSLVNATIKA LLEKYSDKYK LEERDGALYL GWMNRALVGS CAWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-59 | 171 | 534 | 26 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675700.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675701.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675702.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A438DQ25 | 0.0 | A0A438DQ25_VITVI; Scarecrow-like transcription factor PAT1 | ||||
STRING | POPTR_0014s16230.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0944.2.p |
Publications ? help Back to Top | |||
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