PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0746.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 373aa    MW: 42353.6 Da    PI: 7.9126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0746.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-16122167147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v q+G+ +W++ a++++ gR++k+c++rw++ 
  Kaladp0011s0746.2.p 122 RGHWRPAEDAKLKKLVDQFGSQNWNLMAEHFP-GRSGKSCRLRWFNQ 167
                          899*****************************.***********996 PP
2Myb_DNA-binding50.25.8e-16175217246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++ eE+e+l++ ++++G++ W+ I+++++ gRt++ +k++w+ 
  Kaladp0011s0746.2.p 175 TPFSDEEEEKLLKSHTLYGNK-WAMISKMFP-GRTDNAVKNHWHV 217
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.765117168IPR017930Myb domain
SMARTSM007173.0E-13121170IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-28121215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26123175IPR009057Homeodomain-like
CDDcd001673.32E-11125166No hitNo description
PfamPF139211.7E-15125185No hitNo description
PROSITE profilePS5129424.945169223IPR017930Myb domain
SMARTSM007172.5E-14173221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-20176222IPR009057Homeodomain-like
CDDcd001674.36E-10176216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKSQDLKNNA ANGYDSFPRL APPPPPLSLF GDIERREWMG LNMRRKSSSA FDLNQTSGRD  60
EEQNNFKSKF DLNERFYSEG RSDERRDQAV KIIKEVVDRD CHHVEVANDE RNENIQKICR  120
SRGHWRPAED AKLKKLVDQF GSQNWNLMAE HFPGRSGKSC RLRWFNQLDP KINKTPFSDE  180
EEEKLLKSHT LYGNKWAMIS KMFPGRTDNA VKNHWHVIMA RKQREQNNNK CVYKKLKPNP  240
ISPASNQTAA VASKEFVACR DESTVTTVSA TNTCLELMLT PTSVRASPCL FAKLPMGSNE  300
GSIHNIIDLN KQLSNFSGES DADSERTDLD SITCIKLNQK KLEVLGDVKD TGANEPEAIC  360
TYADDCYSVQ GW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-301222227107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976032.17e-70PREDICTED: transcription factor MYB29-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.18e-61myb domain protein 56