PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0574.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 292aa    MW: 32796.5 Da    PI: 9.5247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0574.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28e-1533122197
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkvl+  d+  s+ l++p  fa+++ ++   ++k   le+ +  sW+v++  + ++++y+++kGW  Fv+an+++ gDf+vF l+g  +
  Kaladp0011s0574.1.p  33 FFKVLIGDDY--SDKLRVPPFFAKKClDK--VSGKSFDLET-HCGSWTVEI-AQTGKRGYFFKKGWAAFVRANNIEFGDFLVFFLTGPCR 116
                          7888855444..5569*******999554..5666788777.888******.4555566************************9887433 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                            l v+++
  Kaladp0011s0574.1.p 117 --LSVMMY 122
                          ..466555 PP
2B335.12.4e-111832561290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                          ++ +++l ++f++  g+   + + + +++ +g sW v++    +++r  l++GW++F  +n+L +gD ++ +++++ s+ 
  Kaladp0011s0574.1.p 183 NKYNMRLKRDFMRGSGLA--QMMNVEVTNGEGGSWPVEV--GSGGRR--LGGGWSKFWIDNNLAAGDRCMVRFTRDnSRN 256
                          34459999****999988..77899999***********..555555..*********************9988774544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1830127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2030127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1831125IPR003340B3 DNA binding domain
CDDcd100171.52E-1831123No hitNo description
SMARTSM010199.6E-933125IPR003340B3 DNA binding domain
PfamPF023623.4E-1333122IPR003340B3 DNA binding domain
PROSITE profilePS5086310.475172266IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-11173252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-11175257IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0023176268IPR003340B3 DNA binding domain
PfamPF023622.7E-8183255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRSTIMAREI DEIMVKKEES ETLRGLLFSQ PSFFKVLIGD DYSDKLRVPP FFAKKCLDKV  60
SGKSFDLETH CGSWTVEIAQ TGKRGYFFKK GWAAFVRANN IEFGDFLVFF LTGPCRLSVM  120
MYDKTACVKN LVSLVGRRKK KKSNTHEPAT AATKMFCDTT DEPAPTATNG HCYEYCVTLK  180
KYNKYNMRLK RDFMRGSGLA QMMNVEVTNG EGGSWPVEVG SGGRRLGGGW SKFWIDNNLA  240
AGDRCMVRFT RDNSRNSRQV EFLKLKGEAG QEKATPWGDH ELWSDPSGSV G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RRKKKK
2221228GGRRLGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-13B3 family protein