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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kaladp0011s0226.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
MYB |
| Protein Properties |
Length: 323aa MW: 36117.6 Da PI: 7.8073 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0011s0226.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 43 | 1.1e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W +eEd l+ ++ +G+g +W + ++++g++R++k+c++rw++yl
Kaladp0011s0226.1.p 14 KGPWAPEEDAMLKAYIDAHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
79*********************************************97 PP
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| 2 | Myb_DNA-binding | 35.4 | 2.5e-11 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++ eEd + + G++ W+ Ia+ ++ gRt++++k++w++
Kaladp0011s0226.1.p 70 GFSDEEDNVICSLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
699*****************.*********.***********97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008285 | Biological Process | negative regulation of cell proliferation |
| GO:0035987 | Biological Process | endodermal cell differentiation |
| GO:0045597 | Biological Process | positive regulation of cell differentiation |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000021 | Biological Process | regulation of ion homeostasis |
| GO:2000067 | Biological Process | regulation of root morphogenesis |
| GO:0048226 | Cellular Component | Casparian strip |
| GO:0000975 | Molecular Function | regulatory region DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MGRAPCCDKT LVKKGPWAPE EDAMLKAYID AHGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60
YLRPNIKHGG FSDEEDNVIC SLYISIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLGR 120
RKQCNNIVSS SSSSTMEDTK DGMSDETQRL SNSALERLQL HIQLQNRPRT LNSVNGPTAH 180
WPKLLHPAQE RMIRSLTESQ NDINTPHQHK LDKLDECIGS SGSQIESMRQ GLEQLTSTPS 240
SLSGLQLQAE FENYMKSNSE IIAGKGDEER KELDGSFWWS GEMENKSSAS ISSNSWDDSY 300
SVINSAGGNL MMFHDYGLGY NM*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
