PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0208.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 455aa    MW: 50963.6 Da    PI: 6.8601
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0208.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3992.9e-31143247199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++  
  Kaladp0011s0208.2.p 143 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSANEKGLLLNFEDRRGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDPGDIVSFQRGv 232
                          89***************************966667889*************************************************654 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Kaladp0011s0208.2.p 233 GEmFKDRLFIDWRRR 247
                          766677788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-41135249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-29140233IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-26141237No hitNo description
SMARTSM010191.6E-23143248IPR003340B3 DNA binding domain
PROSITE profilePS5086314.325143248IPR003340B3 DNA binding domain
PfamPF023628.8E-29143247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDRGSNSKGE RHEDLHHQHH HIYQQQPAPS ASGGGSYPAV TSSSPSSSHF SPFSFSHHDL  60
LSPSNPYPPQ TRDWFATSPA VVEDSASFRS SHNYFMEGND DDDDDVRRRI EQQQSSSSYY  120
NSQTSSQHAQ TLAVDQIEKE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSANEKGL  180
LLNFEDRRGK SWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DPGDIVSFQR GVGEMFKDRL  240
FIDWRRRPSN PLLYHHDPSL TISSLSLPPQ YFPFHQTRPA PWGTSTPLYL RPVAQLSSGH  300
QFPQHNFHSH FYHYNQNQQQ QQQQQQGAYS PYNNNDGFIT YPHGSVAVGS SSPTVLYLRS  360
SADEGRSGGD VGNSSTVFDS VPAVHQKAEG KKLRLFGVNM ECENPPSTLD EQSEDLSSSP  420
TPATASSPPE SPRIQSDDGS VPGGGSKGNM SLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-641382483114B3 domain-containing transcription factor NGA1
5os9_B1e-641382483114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839976.18e-86PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ9MAN13e-68NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A2I4G7V02e-84A0A2I4G7V0_JUGRE; B3 domain-containing protein Os03g0120900-like
STRINGXP_010251300.14e-84(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]