PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0049.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 727aa    MW: 79060.6 Da    PI: 7.7604
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0049.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24160261199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kaladp0010s0049.4.p 160 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 248
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kaladp0010s0049.4.p 249 G--GDGILRLGVRRA 261
                          3..677778888875 PP
2Auxin_resp102.55.4e-34286367182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s G+R+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kaladp0010s0049.4.p 286 VINAISTRSVFNISYNPRGTSSDFIIPHSKFTRSLVHKFSCGTRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 367
                          5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40156269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-39156263IPR015300DNA-binding pseudobarrel domain
CDDcd100178.65E-23158260No hitNo description
SMARTSM010191.0E-23160262IPR003340B3 DNA binding domain
PROSITE profilePS5086313.563160262IPR003340B3 DNA binding domain
PfamPF023629.7E-22160261IPR003340B3 DNA binding domain
PfamPF065072.6E-28287367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MAATGRGLNL FDLNTAEEED AAAGGSLSPS PSPSPTSTCS GVVPGSTGCV APSVCLELWH  60
ACVGPLVSLP KKNSLVVYFP QGQLECFGES PAVICGVPPH VFCRVLDVKL HAEVDSDEVC  120
AQVFLIPVAQ EQLPQVDKTE VDGEDDDINC GSKSMTRHMF CKTLTASDTS THGGFSVPRR  180
AAEDCFPPLD YTLQRPSQEL VAKDLHGREW KFRHIYRGQP RRHLLTTGWS AFVNRKKLVS  240
GDAVLFLRGG DGILRLGVRR AAQLKEKPPF PPIFREQQSH GSFSAVINAI STRSVFNISY  300
NPRGTSSDFI IPHSKFTRSL VHKFSCGTRL KMCCETEDAA ERRFTGAVTG VSDLDPIGWP  360
GSKWKCLLVE WDDSENNLHG GRVSPWEVEP AGFVVGCCMP APSGSKRGRN GLPSTIHNSP  420
IPDGKGLPDF RESLRFQKVL QGQEIMSLKP QNTQNHNLAE SLSCYPGTDS SRIGALGNKI  480
SRPYFGNPDF SFNNKGFGES QWFQRVLQGQ EKTSNMPYGM ISCTSSHDEL LGIFNGIALP  540
NFRQTALLHD SNSQFHAAKS SVPVSSPSSV LMFPQATSLV PNPCRVPGLL EGRGIGNQGQ  600
VSPTRPYVGE LPSSYIKDNF VRFESCIPRT QFNQQDLCGH GPRPALSGSQ KLVPSCKNSC  660
RLFGISLTDK EHAPNVADET ILKANQLNTG PAFRITERQF LAQHPTMALG CLQKLDSASD  720
AITYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1004839013354Auxin response factor 1
4ldw_A1e-1004839013354Auxin response factor 1
4ldw_B1e-1004839013354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.10.0PREDICTED: auxin response factor 3
RefseqXP_019078171.10.0PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C10.0A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-172ARF family protein