PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0049.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 663aa    MW: 73115 Da    PI: 8.5949
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0049.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.3e-2496197199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kaladp0010s0049.3.p  96 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 184
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kaladp0010s0049.3.p 185 G--GDGILRLGVRRA 197
                          3..677778888875 PP
2Auxin_resp102.74.7e-34222303182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s G+R+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kaladp0010s0049.3.p 222 VINAISTRSVFNISYNPRGTSSDFIIPHSKFTRSLVHKFSCGTRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 303
                          5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-3992199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-4092205IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-2394196No hitNo description
PfamPF023628.4E-2296197IPR003340B3 DNA binding domain
SMARTSM010191.0E-2396198IPR003340B3 DNA binding domain
PROSITE profilePS5086313.56396198IPR003340B3 DNA binding domain
PfamPF065072.3E-28223303IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVRRLSCRRR RLRNSLQGQL ECFGESPAVI CGVPPHVFCR VLDVKLHAEV DSDEVCAQVF  60
LIPVAQEQLP QVDKTEVDGE DDDINCGSKS MTRHMFCKTL TASDTSTHGG FSVPRRAAED  120
CFPPLDYTLQ RPSQELVAKD LHGREWKFRH IYRGQPRRHL LTTGWSAFVN RKKLVSGDAV  180
LFLRGGDGIL RLGVRRAAQL KEKPPFPPIF REQQSHGSFS AVINAISTRS VFNISYNPRG  240
TSSDFIIPHS KFTRSLVHKF SCGTRLKMCC ETEDAAERRF TGAVTGVSDL DPIGWPGSKW  300
KCLLVEWDDS ENNLHGGRVS PWEVEPAGFV VGCCMPAPSG SKRGRNGLPS TIHNSPIPDG  360
KGLPDFRESL RFQKVLQGQE IMSLKPQNTQ NHNLAESLSC YPGTDSSRIG ALGNKISRPY  420
FGNPDFSFNN KGFGESQWFQ RVLQGQEKTS NMPYGMISCT SSHDELLGIF NGIALPNFRQ  480
TALLHDSNSQ FHAAKSSVPV SSPSSVLMFP QATSLVPNPC RVPGLLEGRG IGNQGQVSPT  540
RPYVGELPSS YIKDNFVRFE SCIPRTQFNQ QDLCGHGPRP ALSGSQKLVP SCKNSCRLFG  600
ISLTDKEHAP NVADETILKA NQLNTGPAFR ITERQFLAQH PTMALGCLQK LDSASDAITY  660
GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-8633325102388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.10.0PREDICTED: auxin response factor 3
RefseqXP_019078171.10.0PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C10.0A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-153ARF family protein