PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0009s0045.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 98aa MW: 10938.4 Da PI: 9.3627 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.1e-07 | 29 | 64 | 20 | 54 |
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++L++llP+ + +++s+K+s +L+++++YI+ L Kaladp0009s0045.1.p 29 MSKLQQLLPElRNRGRSEKVSARKVLQETCNYIRTL 64 789*******777*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.969 | 9 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-7 | 25 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 28 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 29 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MSSRRQSRHQ SSSSESSPRI TGEQILGLMS KLQQLLPELR NRGRSEKVSA RKVLQETCNY 60 IRTLREEVDD LSLRLTELLA TIDADSPEAA VIRSLLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543767.1 | 2e-35 | transcription factor PRE5 | ||||
Refseq | XP_007151219.1 | 2e-35 | hypothetical protein PHAVU_004G027700g | ||||
Refseq | XP_014507201.1 | 2e-35 | transcription factor PRE5 | ||||
Refseq | XP_017438920.1 | 2e-35 | PREDICTED: transcription factor PRE5 | ||||
Refseq | XP_027923623.1 | 2e-35 | transcription factor PRE5 | ||||
Refseq | XP_028196915.1 | 2e-35 | transcription factor PRE5-like | ||||
Refseq | XP_028217318.1 | 2e-35 | transcription factor PRE5-like | ||||
Swissprot | Q9LJX1 | 1e-31 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A2G9I4F9 | 1e-34 | A0A2G9I4F9_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA13G05280.1 | 7e-35 | (Glycine max) | ||||
STRING | GLYMA19G02510.1 | 7e-35 | (Glycine max) | ||||
STRING | XP_007151219.1 | 7e-35 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 2e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0009s0045.1.p |