PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 136aa MW: 15372.3 Da PI: 10.1079

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0767.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.4	3.3e-32	35	85	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Kaladp0008s0767.1.p 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 85 79***********************************************95 PP
2	K-box	22.6	4.5e-09	102	135	3	36
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqR 36 +s++ s++ea+++++ qe+akL+++i nLq+++R Kaladp0008s0767.1.p 102 SSNTGSVSEANTQYYLQEAAKLRQQIANLQNTNR 135 3444559***********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-41	27	86	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.641	27	87	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.06E-44	28	104	No hit	No description
SuperFamily	SSF55455	1.11E-33	28	101	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	29	49	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	29	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-27	36	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	49	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	64	85	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEFKHIGESS SRRGEQLSDT ESPQRKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE 60 LSVLCDAEVA LIVFSSRGRL YEYSNNSVKA TIEKYKKACS DSSNTGSVSE ANTQYYLQEA 120 AKLRQQIANL QNTNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	7e-22	27	95	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006358066.1	1e-70	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_006358067.1	1e-70	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_006358069.1	8e-71	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Swissprot	Q43585	2e-71	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	M1CRK9	1e-69	M1CRK9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400073134	5e-70	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-57	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0767.1.p

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]