PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0008s0720.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 398aa MW: 42200.5 Da PI: 4.3236

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0720.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.7e-12	301	325	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++VRC +C+tV Kaladp0008s0720.1.p 301 CGSCRSLLSYPKGAKYVRCLCCQTV 325 ************************9 PP
2	zf-LSD1	28.3	2.8e-09	339	363	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+Y +G p+VRC++C+++ Kaladp0008s0720.1.p 339 CGRCAVLLMYYYGCPAVRCSNCQFI 363 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-13	298	328	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-9	301	325	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-5	336	365	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-6	339	363	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC 60 PTASVGDFLG ENRGVDPMEM KMGDELSIAE EGDDDAGLPP GWGAARTKVK GIFLPPESIE 120 TDRMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED 180 GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DGPPPGWEAA 240 ATNNGGAEKE PLVKQESCKL EKGKEKECPP PCREPMAAPA PRPPLPSKPL DATSEMGQVV 300 CGSCRSLLSY PKGAKYVRCL CCQTVSFVLE AHQVGQVYCG RCAVLLMYYY GCPAVRCSNC 360 QFITQIGPHN RRPPLSEQGG TLQSQLALLR PTKSVAQ*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC  60
PTASVGDFLG ENRGVDPMEM KMGDELSIAE EGDDDAGLPP GWGAARTKVK GIFLPPESIE  120
TDRMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED  180
GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DGPPPGWEAA  240
ATNNGGAEKE PLVKQESCKL EKGKEKECPP PCREPMAAPA PRPPLPSKPL DATSEMGQVV  300
CGSCRSLLSY PKGAKYVRCL CCQTVSFVLE AHQVGQVYCG RCAVLLMYYY GCPAVRCSNC  360
QFITQIGPHN RRPPLSEQGG TLQSQLALLR PTKSVAQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-34	lsd one like 2

Link Out ? help Back to Top
Phytozome	Kaladp0008s0720.1.p