PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0603.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 588aa    MW: 63431 Da    PI: 8.4217
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0603.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14108147242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g++C++ C+C +C+N+ e+
  Kaladp0008s0603.1.p 108 RQKQCNCKHSKCLKLYCECFASGTYCEN-CNCVNCHNNMEH 147
                          689************************9.********9875 PP
2TCR49.11.1e-15192231140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++k+C+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Kaladp0008s0603.1.p 192 KHNKSCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 231
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17107147IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.781108232IPR005172CRC domain
PfamPF036384.8E-11109144IPR005172CRC domain
SMARTSM011141.6E-18192233IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12195230IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MMEGKDLVPK NGIPSAPMPL DAPQKKLARQ LDFSGVSSAH TTVMPIQPSV TPPAPPPRLV  60
VASATVLLPA PVAVPPPPSL PTLAPHPAMR QVKPESPKTK TKDGTPKRQK QCNCKHSKCL  120
KLYCECFASG TYCENCNCVN CHNNMEHEVS RREAVEATLE RNPNAFRPKI AGSPQVNRAA  180
KEATGDLLLL AKHNKSCHCK KSGCLKKYCE CFQANILCSE NCKCIDCKNF EGSEERKALH  240
GDQATNMAYI QQAANAAITG AVGLSGFISP PLSKRRKGPD IFFGSSSNDL SKIAHIHPVN  300
TGKSPAPSNS SSTSVARSVN PPVSSLSKFT YRSLLADIIQ PHDLKELCSN LVVMSREVVQ  360
TYSEQENSSA HEATEHKILI ATPNQNRTRT HNEAAAENAI INDPDCSCPD NVDMPDRPLS  420
PGTLALMCDE QDTLFMSNST PNRLTSQGGN SGSQFHNVDE MTEVHAEQEK VVLTKFRDTL  480
NRLIYFGEIK ERKCLSLARG EAGMKDAFSN SSINGRYATT NQPIPIPTSN SKNAYSVAAT  540
RIDTSAASTT TTTSAAATIV SNSIGQQLHI PSVGRTGNIK PKIEQHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-3110923911130Protein lin-54 homolog
5fd3_B9e-3110923911130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514278.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-162TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLB9RKN40.0B9RKN4_RICCO; Transcription factor, putative
STRINGXP_002514278.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-139Tesmin/TSO1-like CXC domain-containing protein