PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0500.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 241aa    MW: 26803.8 Da    PI: 4.983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-173075148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ +++E++l+v+++++lG++ W++Ia +++ gRt++++k++w++yl
  Kaladp0008s0500.2.p 30 RGNISPDEEDLIVRLHNLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 75
                         7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.159124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-111036IPR009057Homeodomain-like
SuperFamilySSF466894.6E-201083IPR009057Homeodomain-like
PROSITE profilePS5129426.0952579IPR017930Myb domain
SMARTSM007174.5E-162977IPR001005SANT/Myb domain
PfamPF002499.3E-163075IPR001005SANT/Myb domain
CDDcd001673.68E-123475No hitNo description
Gene3DG3DSA:1.10.10.605.3E-213775IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGFSVSAGLK RCGKSCRLRW LNYLRPDIKR GNISPDEEDL IVRLHNLLGN RWSLIAGRLP  60
GRTDNEVKNY WNTYLSKKIG SSNKNNTKKK QQQPPFHVAQ QTSMNHQVLL EEEKSSLVVT  120
ASEDQLKNSN YMLNTNCSQK VGSGSNEDCL TLEEIIEFAE FGGGKTQQNN IVGADPGSSS  180
TVQHDSFCPL GPESNLAWPG HKDGQWDDWL LDAMAADAED WLPDCDVRDF LNSVETDSTV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-19118140110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268160.15e-44MYBPA1 protein
RefseqXP_016721896.13e-44PREDICTED: transcription factor MYB114-like
RefseqXP_017625244.13e-44PREDICTED: transcription factor MYB114-like
SwissprotQ962761e-38MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A4D6V2V42e-44A0A4D6V2V4_9ROSI; MYB transcription factor 2
STRINGXP_008228203.12e-43(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-39MYB family protein
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]