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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0419.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 357aa MW: 40749.9 Da PI: 9.9398 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.7e-09 | 257 | 304 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E +l+++v+++G g+W+ I r + ++Rt ++k++w+++l Kaladp0008s0419.1.p 257 WSDYEITILIEGVAKYGVGRWTDIKRGLFpptTRRTSVDLKDKWRNLL 304 9*************************99889***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.962 | 248 | 308 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-12 | 250 | 305 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-14 | 251 | 311 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-9 | 253 | 306 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.48E-19 | 255 | 305 | No hit | No description |
Pfam | PF00249 | 7.0E-7 | 257 | 304 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MVDKSMNTCR NPATESVRGW HSSAIRSHNK TKPEVVSHGN GHLICDSVVT FSSIVNNGSP 60 HHRDNDAFFT EKRSRKWYID EYSKYHSVHT NKRTGSLSKN SKKKSTCLKS RYQDCINRNV 120 REKKTLRYSE YMTEAIQVPF GPLVLKECSR KKAFVPSVRF QRNGTDFNID ITSVRDKEYT 180 EATFLHPSPD VIFERNLQFM FAGPCDPEDH SKAIAKISEV NTNTELSLAP SQDERSDDND 240 LGEVTSDKSG RKHNRYWSDY EITILIEGVA KYGVGRWTDI KRGLFPPTTR RTSVDLKDKW 300 RNLLKACTAQ LHSKNEGRRV AHQQVPQAVL QQVKELAAIH PYPKNHSPKN ALVVRC* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-24 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0419.1.p |