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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0006s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 547aa MW: 58899 Da PI: 8.3033 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.7e-41 | 128 | 205 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kaladp0006s0090.1.p 128 TCQVDSCMVDLSDAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 205 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-33 | 122 | 190 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.915 | 126 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 127 | 207 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-29 | 129 | 202 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MARKRDLSYQ QQELMIDQPY HPSGGLQNSR DYWNSKGWNW DCTRFVAQQV NQNAMNLDIP 60 VQSTQNKSNI NGVAVEDDGS LCLKLGSGSG GSSSSDEPQL RPAKRVAASP GGKNSRSPGA 120 GGNGNHPTCQ VDSCMVDLSD AKDYHRRHKV CEAHSKATQA LVGKQMQRFC QQCSRFHVLS 180 EFDEGKRSCR RRLAGHNRRR RKTQPDDATS RLLSAGGQEN AVNTGLDLVG LLAALARAQG 240 NQDNANCAPA IVPNNEQLIQ LISKINSFPP PTNATTKLPV SDNLEITIRE ASSEHQSGSS 300 PNSSSQSTLN LLGVLPHASP VSVPDVSAMP SQRSSRSSDS EKTKSADTYQ PGPLVLRKRT 360 TLDLSSFGGE RSSNSCHYPV EDSNSQDTQA NLPLQLFFSS PEDNNSPPKM ANSSKYFSSD 420 SSNQNEDRSP SSSPGVQLFP VKPSKQRVNH DRITDVVNAT TQVGRTPGGT VSFDLFGGSN 480 KGVEVDFFRG SPNQAGYASP VSATSPSSST CGAQDLTGRI LFKLFDKDPS HLPVALRSEV 540 CILDAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 119 | 202 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021283617.1 | 1e-146 | squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2R4K351 | 1e-144 | A0A2R4K351_LITCN; Squamosa promoter binding-like protein | ||||
STRING | VIT_18s0122g00380.t01 | 1e-144 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 4e-83 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0006s0090.1.p |