PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0003s0134.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 357aa    MW: 39775.5 Da    PI: 5.0205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0003s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0003s0134.1.p 14 RGRWTAEEDQILIKYIQDHGEGSWRSLPKNAGLMRCGKSCRLRWINYL 61
                         8*********************************************97 PP
2Myb_DNA-binding51.62.2e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k+rw+++l
  Kaladp0003s0134.1.p  67 RGNISPQEEDLIIKLHAALGNR-WSLIASQLP-GRTDNEIKNRWNSHL 112
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.127961IPR017930Myb domain
SuperFamilySSF466891.91E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002497.9E-161461IPR001005SANT/Myb domain
CDDcd001672.37E-111661No hitNo description
PROSITE profilePS5129426.30762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2565116IPR009057Homeodomain-like
SMARTSM007172.6E-1666114IPR001005SANT/Myb domain
PfamPF002494.4E-1567112IPR001005SANT/Myb domain
CDDcd001673.70E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRAPCCQKV GLKRGRWTAE EDQILIKYIQ DHGEGSWRSL PKNAGLMRCG KSCRLRWINY  60
LRKDLKRGNI SPQEEDLIIK LHAALGNRWS LIASQLPGRT DNEIKNRWNS HLSRSITSWR  120
RPVNDTLPQQ ILDNLAKLMA KPNPSTKKKG SKKNGPANKE TRDKPVTLED DNNDKPQTPD  180
VHKESLPTNS CSQQSLQSIL SLEDRYEAEE GEMDMDLGPV DDYGGVLSLS DMVTPSDPST  240
MMHQPLSPNE ILSPGALYPE FMNELAGLST GHAEMGSTSS WLPNCSTSTM DNTTQPSLSS  300
PSSPFTIDHL LNISSDWNWE DCVQTPNDQD LIMNHEVGSF DNLSWLWDDG GEFGAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231211625128MYB TRANSFORMING PROTEIN
1mse_C5e-23121162105C-Myb DNA-Binding Domain
1msf_C5e-23121162105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891841.14e-75transcription factor MYB30
STRINGXP_009622107.13e-73(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-69myb domain protein 12