PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0002s0088.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 627aa    MW: 68420.4 Da    PI: 6.912
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0002s0088.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23119220199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kaladp0002s0088.2.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVSQKKLVAGDSIVFL 206
                          89****************************996555555..89*********************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Kaladp0002s0088.2.p 207 --RAECGDLCVGIRRA 220
                          ..459*********97 PP
2Auxin_resp113.32.2e-37287370183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+ ++ FevvY+Prast+eF+v+++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Kaladp0002s0088.2.p 287 AARLAADGQLFEVVYYPRASTPEFCVRASLVNAALRIRWCSGMRFKMAFETEDSSRISWfMGTISSVQIADPIRWPNSPWRLLQ 370
                          6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-36114222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-28116222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-20118219No hitNo description
SMARTSM010191.6E-20119221IPR003340B3 DNA binding domain
PfamPF023622.1E-21119220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52119221IPR003340B3 DNA binding domain
PfamPF065071.4E-32287370IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MIPFMDSKDK ESEKCLDSQL WHACAGGMVQ MPALNSRVYY FPQGHAEHAS GNVDFRQLSR  60
IPAYVLCRVL AVKFMADTET DEVYAKIRLV PVRVNDREYD EVGLSGLNCS EGLEKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGEIWK FRHIYRGTPR  180
RHLLTTGWST FVSQKKLVAG DSIVFLRAEC GDLCVGIRRA KRGIFGESES ASGWNPAGGN  240
CSMPYGGLLS SFLRDDEKKL LGNSECLSSG SGCVVKGKVS AESVVEAARL AADGQLFEVV  300
YYPRASTPEF CVRASLVNAA LRIRWCSGMR FKMAFETEDS SRISWFMGTI SSVQIADPIR  360
WPNSPWRLLQ VSWDEPDLLH NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQHPEIQ  420
MNDQLGVASF SGSLLGPSSA YSCLDLVPAG MQGARHAPFG ASLSDIHNSL LSSFFPPYFP  480
PIDHSRAQTR DFNCSSAVQR PGKNEEASCS LTIGNAAPDE AQKSDEAKAS PFVLFGRTIL  540
TEQQISVSGS GDITGVDMTR GSSVGSGSTS QPQEPSTQNR TYSLPDKGSE SESDLGTGRC  600
KILAEAVQLQ TLEMSDSVTS PKQQKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-801639151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027336.20.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A061ET580.0A0A061ET58_THECC; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]