PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0002s0065.5.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 345aa    MW: 38952.1 Da    PI: 7.2503
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0002s0065.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-083454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C f+++ G C+yG+rC++ H+
  Kaladp0002s0065.5.p 34 VCTFYQK-GNCSYGSRCRYEHV 54
                         6******.***********997 PP
2zf-CCCH21.54e-07125147326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ fa+ G C++Gd+C+ +Hg
  Kaladp0002s0065.5.p 125 RAICS-FAAAGSCPRGDNCPHIHG 147
                          78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.549128IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8682956IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404122149IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4123148IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4125147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4127147IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.42E-13181255No hitNo description
Gene3DG3DSA:3.30.40.108.5E-10184250IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.02E-4190250No hitNo description
SMARTSM001844.8E-7191248IPR001841Zinc finger, RING-type
PfamPF000978.2E-7191248IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.032191249IPR001841Zinc finger, RING-type
PROSITE patternPS005180215224IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.638278307IPR000571Zinc finger, CCCH-type
SMARTSM003560.16278306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ  60
TYEVPSSASF HQPLLSEPGS VADPSQFTNN EATVSVPAWS QVPAQISLYD NEDFVDSRIL  120
DPADRAICSF AAAGSCPRGD NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL  180
QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS  240
ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC  300
FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRLSDFLAN LNMR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186621.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotQ5ZA071e-167C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2C9V7U80.0A0A2C9V7U8_MANES; Uncharacterized protein
STRINGcassava4.1_010375m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-161C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]