PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0227.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 216aa    MW: 23416.7 Da    PI: 6.339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0227.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.8e-42361351100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+lapyfp ++p+kf ++h++FGasn++kll++lpe +r da+ss+vyeA ar+rdPvyG++g i +lq+++++l
  Kaladp0001s0227.1.p  36 PCAACKILRRRCADKCILAPYFPPTEPQKFTIAHRVFGASNIIKLLQDLPEAQRADAVSSMVYEASARIRDPVYGCAGAICHLQNHVREL 125
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+la+ k+e
  Kaladp0001s0227.1.p 126 QAQLAKSKAE 135
                          *****99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.17235136IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4236133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEHSERSWRS SATPSPISSP SSSPPPPQKT TVIMSPCAAC KILRRRCADK CILAPYFPPT  60
EPQKFTIAHR VFGASNIIKL LQDLPEAQRA DAVSSMVYEA SARIRDPVYG CAGAICHLQN  120
HVRELQAQLA KSKAEIVNLQ AHQAQLVALI CVEVSSAQPN NNTTKTASDQ LFDCGGFFGS  180
PLAEDFYSGL GFEVESDGMG SMGWEMPLWP DMMIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-403513810113LOB family transfactor Ramosa2.1
5ly0_B1e-403513810113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597159.14e-78LOB domain-containing protein 1
SwissprotQ9SK081e-66LBD11_ARATH; LOB domain-containing protein 11
TrEMBLG7IKN31e-76G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES674102e-77(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-69LOB domain-containing protein 11