PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0216.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 787aa    MW: 86332.6 Da    PI: 7.3295
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0216.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23166267199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L  gD v+F  
  Kaladp0001s0216.4.p 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 253
                          99****************************963.3445679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Kaladp0001s0216.4.p 254 -RGESGELRLGIRRA 267
                          .449999*****996 PP
2Auxin_resp109.14.6e-36292373182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++  G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kaladp0001s0216.4.p 292 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 373
                          68999****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-40159275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-42160278IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-23164266No hitNo description
SMARTSM010192.2E-24166268IPR003340B3 DNA binding domain
PfamPF023625.4E-22166267IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915166268IPR003340B3 DNA binding domain
PfamPF065079.7E-31292373IPR010525Auxin response factor
SuperFamilySSF542773.63E-9648731No hitNo description
PfamPF023091.2E-5648736IPR033389AUX/IAA domain
PROSITE profilePS5174520.635652747IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW  60
HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLAN  120
KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK STPHMFCKTL TASDTSTHGG  180
FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTSGWSLFVS  240
QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG NQSSLPTVLS SVANAILTKN  300
VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF EMDDSPERRC SGIVTGMGDL  360
DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL PPPMSFHGSP QLKKLRTCLQ  420
SSLQSGLADD LSTGGSGFLD LEESMRSSSK VLRGQENSGF RSPYLLNQPL GSSKPSQATV  480
LEGLNIQSTG YTTFGKSDVF PTVLQGQEVC PYSAWRKPSI GCCNLSSTHQ RPEPSFYPVA  540
SAGSRSVYFP LHSGIQKEMQ GPAVSLSSRF AGGSGPFGRP PVYNGMDIDE PRRFVPMNAQ  600
KVPVDAAASL PHSLEAAAKD GRNETSSAAP TACRLFGISL TGETSTQNAS KRSCTKVHKQ  660
GSMVGRAIDL SKLNGYTDLL FELEWLFAME GLLRDPEKGW RILYTDSEND MMVVGDDPWH  720
EFCEVVSKIH IYTKDEVEKL NIGVVASDDT QSCLEEAPEG AGVSKSSSVG QPESYPTKKK  780
GLERLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-118393952353Auxin response factor 1
4ldy_B1e-118393952353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279163.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLD7SKV90.0D7SKV9_VITVI; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]