PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0197.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 164aa    MW: 18186.2 Da    PI: 11.1452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0197.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-117673498
                         SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           + l  + g++W+v +    k++  ++ kGWk F k n + + Df+vF++ g++ f  +v++f 
  Kaladp0001s0197.3.p  7 NCVNLVVSGGQKWRVGF--VVKRKDWFFNKGWKAFLKGNAVSSFDFLVFRYLGSMAF--HVTIFG 67
                         457888899********..666667889*************************9999..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.22E-7166No hitNo description
PROSITE profilePS5086312.323169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-15471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13671IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-8766IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKGEKGNCVN LVVSGGQKWR VGFVVKRKDW FFNKGWKAFL KGNAVSSFDF LVFRYLGSMA  60
FHVTIFGPNG CAKLSASSGD LPKAVGVDTE KRRQNRQNLF KRVQMGSEKR GPGRHHVFTP  120
AEQKAADSFT SSLPFFVKTL AWKSKQSPIM VTSICLLSNL VHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-09B3 family protein