PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0197.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13443.6 Da PI: 11.3998 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.1 | 5.8e-12 | 7 | 67 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l + g++W+v + k++ ++ kGWk F k n + + Df+vF++ g++ f +v++f Kaladp0001s0197.2.p 7 NCVNLVVSGGQKWRVGF--VVKRKDWFFNKGWKAFLKGNAVSSFDFLVFRYLGSMAF--HVTIFG 67 458888999********..666667889*************************9999..999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.61E-7 | 1 | 66 | No hit | No description |
PROSITE profile | PS50863 | 12.323 | 1 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 4 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-13 | 5 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-8 | 7 | 66 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MKGEKGNCVN LVVSGGQKWR VGFVVKRKDW FFNKGWKAFL KGNAVSSFDF LVFRYLGSMA 60 FHVTIFGPNG CAKLSASSGD LPKAVGVDTE KRRQNRQNLF KRVQMGSEKR GPGRHHGMSF 120 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 5e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0001s0197.2.p |