PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0197.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 277aa    MW: 31051.8 Da    PI: 10.7803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.6e-1720110198
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv++p++++   rl +pk f+e++ +g+  ++  + l  + g++W+v +    k++  ++ kGWk F k n + + Df+vF++ g++ 
  Kaladp0001s0197.1.p  20 FFKVFVPEYSS--VRLKIPKGFVENNmKGE--KGNCVNLVVSGGQKWRVGF--VVKRKDWFFNKGWKAFLKGNAVSSFDFLVFRYLGSMA 103
                          89999777766..569*******9885444..55579999***********..666667889*************************999 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +v++f 
  Kaladp0001s0197.1.p 104 F--HVTIFG 110
                          9..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2314114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2016114IPR015300DNA-binding pseudobarrel domain
CDDcd100177.28E-1618109No hitNo description
PROSITE profilePS5086312.47818112IPR003340B3 DNA binding domain
PfamPF023623.2E-1320109IPR003340B3 DNA binding domain
SMARTSM010196.0E-1220112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6171273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-9172273IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAGAGGAGRF GEERDRQPQF FKVFVPEYSS VRLKIPKGFV ENNMKGEKGN CVNLVVSGGQ  60
KWRVGFVVKR KDWFFNKGWK AFLKGNAVSS FDFLVFRYLG SMAFHVTIFG PNGCAKLSAS  120
SGDLPKAVGV DTEKRRQNRQ NLFKRVQMGS EKRGPGRHHV FTPAEQKAAD SFTSSLPFFV  180
KTLAWKSKQS PIMYLPHSSL KQHSITCSHN QRIVLRSLDG YRQQVKIGKY PYVCSLGEGL  240
TQFMRHVNAS DGDVLIFQVL SRFPLEMLVQ IADKTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-13B3 family protein