PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58832.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91580.6 Da    PI: 6.6186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58832.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-192583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  KZV58832.1 25 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                5679*****************************************************97 PP
2START166.32.1e-521703782205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++++++l+v+ ++  g+++l +++l
  KZV58832.1 170 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVVEILKDRP-MWFRYCRAVDVLNVLPTAngGTIELLYMQL 267
                 789*******************************************************9998888888.****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  + +g++v+ ++S++++q+ p+    +++vRae++pSg+l++p ++g+s +++v+h++l++++++++lr+l++s+++ ++
  KZV58832.1 268 YAPTTLAPgRDFWLLRYTSVMDDGSLVVSERSLSNTQNGPTmppVQNFVRAEVFPSGYLVRPYEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVLAQ 366
                 ***************************************9998899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  KZV58832.1 367 KTTMAALRHLRQ 378
                 *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5162084IPR001356Homeobox domain
SMARTSM003895.2E-162288IPR001356Homeobox domain
SuperFamilySSF466897.27E-172487IPR009057Homeodomain-like
CDDcd000867.90E-172585No hitNo description
PfamPF000462.2E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-182783IPR009057Homeodomain-like
CDDcd146861.81E-677116No hitNo description
PROSITE profilePS5084824.946160374IPR002913START domain
CDDcd088757.50E-74164380No hitNo description
SuperFamilySSF559611.13E-36169381No hitNo description
SMARTSM002344.6E-39169379IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-21169375IPR023393START-like domain
PfamPF018526.5E-50170378IPR002913START domain
PfamPF086704.1E-48690832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MAMSCKDSNR AVTASGGEGV MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVY  120
ENSYFRQHTP SNALATKDTS CESVVTSGQH HHLTSQHPPR DASPAGLLSI AEETLTEFLS  180
KATGTAVEWV QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVV EILKDRPMWF  240
RYCRAVDVLN VLPTANGGTI ELLYMQLYAP TTLAPGRDFW LLRYTSVMDD GSLVVSERSL  300
SNTQNGPTMP PVQNFVRAEV FPSGYLVRPY EGGGSIIHIV DHMNLEAWSV PEVLRPLYES  360
STVLAQKTTM AALRHLRQIA QDVSQPNTTN MGRRPAALRA LSHRLSRGFN EALNGFSDEG  420
WSLIGNDGMD DVTILVNSNP DKLMGLNVSF NNGYTSICNA VLCAKASMLL QNVPPAILLR  480
FLREHRSEWA DNNIDAYSAA AIKMGPCTLL GPRVGNFGGQ LLEVIKLEGV GHSPEDAMLP  540
RDVFLLQMCS GMDENSVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS VKENSSPNRT  600
LDLASALETG AGGNKPSNEL GVTSGSTRSV MTIAFEFAFE SHMQDNVASM ARQYVRSIIS  660
SVQRVALALS PSHLGPAGLR SHLGTPEAHT LARWICQSYR SYLGVELLNC NGEGSESILK  720
ALWHHSDAIM CCSIKAMPVF TFANQAGLDM LETTLVALQD ICLDKIFDDH GRKNLVSEFP  780
HIMNQGFTSL QGGICLSSMS RPVSYERAVA WKVLNDDEAA NCICFMFVNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58832.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080516.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2Z7DHX00.0A0A2Z7DHX0_9LAMI; Homeobox-leucine zipper protein ATHB-15
STRINGcassava4.1_001674m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]